Cohesion                Cohesion calculation
RMT_threshold           Get RMT threshold for a correlation matrix
adjacency_similarity    Calculate Similarity Between Two Graphs via
                        Adjacency Matrices
anno_edge               Use dataframe to annotate edges of an igraph
anno_vertex             Use data.frame to annotate vertexes of metanet
arc_count               Edgelist
arc_taxonomy            Edgelist
as.ggig                 Transfer an igraph object to a ggig
as_arc                  Layout as a arc
as_circle_tree          Layout as a circle_tree
as_coors                Transfer to a coors object
as_line                 Layout as a line
as_multi_layer          Layout as a multi_layer
as_poly_sector          Layout as a multi_layer
as_polyarc              Layout as a polyarc
as_polycircle           Layout as a polycircle
as_polygon              Layout as a polygon
c_net_annotate          Annotate a metanet
c_net_build             Construct a metanet from a corr object
c_net_calculate         Calculate correlation for one or two t(otutab),
                        or distance for one t(otutab).
c_net_compare           Compare Two Networks
c_net_difference        Difference two networks
c_net_ego               Extract ego-centric subnetwork with preserved
                        class attributes
c_net_filter            Filter a network according to some attributes
c_net_from_edgelist     Construct a network from edge_list dataframe
c_net_highlight         Highlight specific nodes in a network
c_net_intersect         Intersect two networks
c_net_layout            Layout coordinates
c_net_load              Load network file
c_net_plot              Plot a metanet
c_net_save              Save network file
c_net_set               Set basic attributes from totu table
c_net_stability         Evaluate the stability of a network
c_net_union             Union two networks
c_net_update            Update a metanet object or transform igraph
                        object to metanet object
cal_sim                 Calculate similarity for one t(otutab)
check_tabs              Check tables and extract common samples
clean_igraph            Clean a igraph object
clean_multi_edge_metanet
                        Clean multi edge metanet to plot
co_net                  MetaNet networks
co_net2                 MetaNet networks
co_net_rmt              MetaNet networks
df2net_tree             Transform a dataframe to a network edgelist.
extract_sample_net      Extract each sample network from the whole
                        network
fast_cor                Fast correlation calculation
filter_n_module         Filter some modules as others
fit_power               Fit power-law distribution for an igraph
g_layout                Layout with group
g_layout_nice           Layout with group nicely
g_layout_poly_sector    Layout with group
g_layout_polygon        Layout with group as a polygon
get_community           Get community
get_e                   Get edge information
get_group_skeleton      Get skeleton network according to a group
get_module              Get module
get_module_eigen        Get module_eigen
get_n                   Get network information
get_v                   Get vertex information
input_cytoscape         Input a cyjs file exported by Cytoscape
input_gephi             Input a graphml file exported by Gephi
is_metanet              Is this object a metanet object?
links_stat              Link summary of the network
metab                   MetaNet networks abundance
metab_g                 MetaNet networks metadata
micro                   MetaNet networks abundance
micro_g                 MetaNet networks metadata
module_detect           Detect the modules
module_eigen            Calculate the eigenvalue of each module and
                        correlation of nodes and eigenvalue
                        (node_eigen_cor).
module_net              Generate a n-modules network
multi1                  MetaNet networks
multi_net_build         Multi-omics network build
nc                      Calculate natural_connectivity
netD3plot               plot use networkD3
net_par                 Calculate all topological indexes of a network
olympic_rings_net       Plot olympic rings using network
p.adjust.table          p.adjust apply on a correlation table (matrix
                        or data.frame)
plot.ggig               Plot a ggig
plot.metanet            Plot a metanet
plot.metanet_compare    Plot a metanet_compare
plot.rmt_res            Plot a rmt_res
plot.robust             Plot robust
plot.robustness         Plot robustness
plot.vulnerability      Plot vulnerability
plot_corr_heatmap       Plot a correlation heatmap
plot_e_type_bar         Plot e_type bar
plot_multi_nets         Batch drawing multiple network diagrams
plot_net_degree         Plot degree distribution of networks
print.cohesion          Print method for 'cohesion' objects
print.coors             Print method for 'coors' objects
print.corr              Print method for 'corr' objects
print.ggig              Print method for 'ggig' objects
print.metanet           Print method for 'metanet' objects
print.metanet_compare   Print method for 'metanet_compare' objects
print.robust            Print method for 'robust' objects
print.robustness        Print method for 'robustness' objects
print.vulnerability     Print method for 'vulnerability' objects
rand_net                Degree distribution comparison with random
                        network
rand_net_par            Net_pars of many random network
read_corr               Read a corr object
save_corr               Save a corr object
show_MetaNet_logo       Show MetaNet logo
smallworldness          Calculate small-world coefficient
spatstat_layout         Generate spatial layout using 'spatstat'
summ_2col               Summaries two columns information
summary.corr            Summary method for 'corr' objects
summary_module          Summary module index
to_module_net           Transformation a network to a module network
transc                  MetaNet networks abundance
transc_g                MetaNet networks metadata
transform_coors         Transform the layout of a 'coors' object
twocol_edgelist         Quick build a metanet from two columns table
venn_net                Venn network
zp_analyse              Zi-Pi calculate
