R: Monte Carlo Simulations of Time Changes in Sequences

# Monte Carlo Simulations of Time Changes in Sequences

## Documentation for package ‘MCseqReplic’ version 1.0.0

- DESCRIPTION file.
- Package NEWS.

## Help Pages

MCclustcomp | Comparing MC-clusters with cluster of observed data
MCclustqual | Cluster quality measures by MC-sets
MCdisscorr | Correlation between observed and MC-simulated distances
MCdisslist | List of dissimilarity matrices
MCExtractDist | Extract k-th dissimilarity matrix from u.diss
MCmdscorr | Correlation between 1st MDS factor of observed and MC-simulated distances
MCnunique | Number of unique replicated sequences
MCpj | Generate distribution of timing errors
MCratios | Ratios of distances on their standard errors
MCseqdistSE | Distance standard errors derived from sets of MC-replicated sequences
MCseqReplicate | Generate R altered sequence data sets.
MCudist | Dissimilarities between unique replicated sequences
print.distMC | Print method for distMC objects
print.MCratios | Print method for MCratios objects
seqdistMCSE | Mean and standard deviation of dissimilarities between pairs of randomly altered sequences.
summary.distMC | Summary method for distMC objects
summary.MCratios | Summary method for MCratios objects