Package: HTGM3D
Version: 1.0.3
Date: 2026-04-26
Title: Three Dimensional High Throughput 'GoMiner'
Authors@R: c(
          person("Barry", "Zeeberg", email = "barryz2013@gmail.com",
                role = c("aut", "cre")))
Maintainer: Barry Zeeberg <barryz2013@gmail.com>
Author: Barry Zeeberg [aut, cre]
Depends: R (>= 4.2.0)
Imports: minimalistGODB, GoMiner, HTGM, HTGM2D, grDevices, stats,
        R2HTML, rgl, vprint, randomGODB, stringr, salesforcer
LazyData: true
LazyDataCompression: xz
Description: The Gene Ontology (GO) Consortium <https://geneontology.org/> organizes genes
  into hierarchical categories based on biological process (BP), molecular function (MF) and
  cellular component (CC, i.e., subcellular localization). Tools such as 'GoMiner' (see Zeeberg, B.R.,
  Feng, W., Wang, G. et al. (2003) <doi:10.1186/gb-2003-4-4-r28>) can leverage GO to perform
  ontological analysis of microarray and proteomics studies, typically generating a list of
  significant functional categories. To capture the benefit of all three ontologies,
  I developed 'HTGM3D', a three-dimensional version of 'GoMiner'.
License: GPL (>= 2)
Encoding: UTF-8
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
RoxygenNote: 7.3.3
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2026-04-26 17:45:48 UTC; barryzeeberg
Repository: CRAN
Date/Publication: 2026-04-26 18:10:02 UTC
Built: R 4.5.2; ; 2026-05-01 19:30:55 UTC; unix
