R: Detection and Reconstruction of Muscle Fibers from diceCT Image Data

# Detection and Reconstruction of Muscle Fibers from diceCT Image Data

## Documentation for package ‘GoodFibes’ version 1.0.0

- DESCRIPTION file.

## Help Pages

GoodFibes-package | Detection and Reconstruction of Muscle Fibers from diceCT Image Data
ant.final | Ant muscle fibers finalized
ant.raw | Raw ant muscle fibers
check.overlap | Check if muscle fibers are redundant
color.scale | A simple wrapper to create colors for a continuous variable
crop.stack | Automated imaging cropping
equalize.stack | Automated histogram equalization of image state
fiber.angle | Calculating the orientation of muscle fibers
fiber.curve | Calculate the relative curvature of muscle fibers
fiber.lengths | Calculated the length of smoothed muscle fibers
fibers.smoothed | Smoothing of estimated fiber paths
find.endpoints | Find endpoints for the line of action of a muscle
fuse.fibers | Fuse incomplete fibers
fuse.fibers.auto | Automated repeated fusing of fiber paths
good.fibes | Automated detection of muscle fibers from diceCT scans
GoodFibes | Detection and Reconstruction of Muscle Fibers from diceCT Image Data
muscle.plot | Plot a single muscle fiber
muscle.plot.multi | Plot multi muscle fibers with a muscle outline
muscle.plot.stl | Plot and export muscle fibers to stl
pointsGenerator | Line points generator
quality.check | Quality testing of possible muscle fibers detected by good.fibes
sequencePlot | Plot the path of a muscle fiber generated using good.fibes
thresholdPlot | Plot image from diceCT stack using thresholding