CaseControlRun          Fully runs a case-control regression model,
                        returning the model and results
ColossusCoxSurv         Interprets basic cox survival formula RHS
ColossusLogitSurv       Interprets basic logistic survival formula RHS
                        with no grouping
ColossusPoisSurv        Interprets basic poisson survival formula RHS
CoxRun                  Fully runs a cox or fine-gray regression model,
                        returning the model and results
CoxRunMulti             Fully runs a cox or fine-gray regression model
                        with multiple column realizations, returning
                        the model and results
Date_Shift              Automates creating a date difference column
EventAssignment         Generic background/excess event calculation
                        function
EventAssignment.default
                        Predicts how many events are due to baseline vs
                        excess
EventAssignment.poisres
                        Predicts how many events are due to baseline vs
                        excess for a completed poisson model
EventAssignment.poisresbound
                        Predicts how many events are due to baseline vs
                        excess for a completed poisson likelihood
                        boundary regression
Event_Count_Gen         uses a table, list of categories, and list of
                        event summaries to generate person-count tables
Event_Time_Gen          uses a table, list of categories, list of
                        summaries, list of events, and person-year
                        information to generate person-time tables
Joint_Multiple_Events   Automates creating data for a joint competing
                        risks analysis
LikelihoodBound         Generic likelihood boundary calculation
                        function
LikelihoodBound.coxres
                        Calculates the likelihood boundary for a
                        completed cox model
LikelihoodBound.default
                        Generic likelihood boundary calculation
                        function, default option
LikelihoodBound.poisres
                        Calculates the likelihood boundary for a
                        completed Poisson model
Likelihood_Ratio_Test   Defines the likelihood ratio test
Linked_Dose_Formula     Calculates Full Parameter list for Special Dose
                        Formula
Linked_Lin_Exp_Para     Calculates The Additional Parameter For a
                        linear-exponential formula with known maximum
LogisticRun             Fully runs a logistic regression model,
                        returning the model and results
OMP_Check               Checks the OMP flag
PoisRun                 Fully runs a poisson regression model,
                        returning the model and results
PoisRunJoint            Fully runs a joint poisson regression model,
                        returning the model and results
PoisRunMulti            Fully runs a poisson regression model with
                        multiple column realizations, returning the
                        model and results
RelativeRisk            Generic relative risk calculation function
RelativeRisk.coxres     Calculates hazard ratios for a reference vector
RelativeRisk.default    Generic relative risk calculation function,
                        default option
Replace_Missing         Automatically assigns missing values in listed
                        columns
Residual                Generic Residual calculation function
Residual.default        Generic Residual calculation function, default
                        option
Residual.poisres        Calculates the Residuals for a completed
                        poisson model
System_Version          Checks OS, compilers, and OMP
Time_Since              Automates creating a date since a reference
                        column
factorize               Splits a parameter into factors
gen_time_dep            Applies time dependence to parameters
get_form                Interprets a Colossus formula and makes
                        necessary changes to data
get_form_joint          Interprets a Poisson joint formula and makes
                        necessary changes to data
plot.coxres             Performs Cox Proportional Hazard model plots
plotMartingale          Generic Martingale Residual Plotting function
plotMartingale.coxres   Performs Cox Proportional Hazard model
                        martingale residual plots
plotMartingale.default
                        Generic Martingale Residual Plotting function,
                        default option
plotRisk                Generic Risk Plotting function
plotRisk.coxres         Performs Cox Proportional Hazard model hazard
                        ratio plots
plotRisk.default        Generic Risk Plotting function, default option
plotSchoenfeld          Generic Schoenfeld Residual Plotting function
plotSchoenfeld.coxres   Performs Cox Proportional Hazard model
                        schoenfeld residual plots
plotSchoenfeld.default
                        Generic Schoenfeld Residual Plotting function,
                        default option
plotSurvival            Generic Survival Plotting function
plotSurvival.coxres     Performs Cox Proportional Hazard model survival
                        plots
plotSurvival.default    Generic Survival Plotting function, default
                        option
print.caseconres        Prints a case-control regression output clearly
print.coxres            Prints a cox regression output clearly
print.coxresbound       Prints a cox likelihood boundary regression
                        output clearly
print.logitres          Prints a logistic regression output clearly
print.poisres           Prints a poisson regression output clearly
print.poisresbound      Prints a poisson likelihood boundary regression
                        output clearly
