R: Multiple Testing Methods for Exploratory Research

# Multiple Testing Methods for Exploratory Research

## Documentation for package ‘cherry’ version 0.6-15

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

adjusted | Adjusted p-values for the number of true hypotheses.
alpha | Class "closure" for storing the result of the closed testing procedure
alpha-method | Class "DAG" for storing the result of the DAG multiple testing method
alpha-method | Class "closure" for storing the result of the closed testing procedure
alpha-method | Class "region" for storing the result of the region procedure
alpha<- | Class "closure" for storing the result of the closed testing procedure
alpha<--method | Class "closure" for storing the result of the closed testing procedure
closed | Closed Testing for Exploratory Research
closure | Class "closure" for storing the result of the closed testing procedure
closure-class | Class "closure" for storing the result of the closed testing procedure
construct | Constructing a DAG.
curveFisher | Confidence limits for the number of true hypotheses, with shortcuts.
curveMeinshausen | Confidence limits for the number of true hypotheses, with shortcuts.
curveSimes | Confidence limits for the number of true hypotheses, with shortcuts.
DAG | Class "DAG" for storing the result of the DAG multiple testing method
DAG-class | Class "DAG" for storing the result of the DAG multiple testing method
DAGmethod | Testing of hypotheses, forming a DAG.
DAGpick | Confidence limits for the number of false hypotheses in a given family of sets.
DAGstructure | Class "DAGstructure" for storing the result of the construct method that constructs the DAG.
DAGstructure-class | Class "DAGstructure" for storing the result of the construct method that constructs the DAG.
defining | Class "closure" for storing the result of the closed testing procedure
defining-method | Class "closure" for storing the result of the closed testing procedure
hommelFast | Calculates adjusted p-values of Hommel's method efficiently.
hypotheses | Class "closure" for storing the result of the closed testing procedure
hypotheses-method | Class "closure" for storing the result of the closed testing procedure
implications | Class "region" for storing the result of the region procedure
implications-method | Class "DAG" for storing the result of the DAG multiple testing method
implications-method | Class "region" for storing the result of the region procedure
istwoway | Class "DAGstructure" for storing the result of the construct method that constructs the DAG.
istwoway-method | Class "DAGstructure" for storing the result of the construct method that constructs the DAG.
NAEP | National Assessment of Educational Progress (NAEP) p-values
pick | Confidence limits for the number of true hypotheses.
pickFisher | Confidence limits for the number of true hypotheses, with shortcuts.
pickMeinshausen | Confidence limits for the number of true hypotheses, with shortcuts.
pickSimes | Confidence limits for the number of true hypotheses, with shortcuts.
pvalue | Class "region" for storing the result of the region procedure
pvalue-method | Class "DAG" for storing the result of the DAG multiple testing method
pvalue-method | Class "region" for storing the result of the region procedure
region | Class "region" for storing the result of the region procedure
region-class | Class "region" for storing the result of the region procedure
regionmethod | Testing of all possible region hypotheses
regionpick | Confidence limits for the number of false hypotheses in a given region.
regionplot | Visualizing of the region hypotheses that could be rejected.
regionplot2 | Visualizing of the region hypotheses that could be rejected.
shortlist | Class "closure" for storing the result of the closed testing procedure
shortlist-method | Class "closure" for storing the result of the closed testing procedure
show-method | Class "DAG" for storing the result of the DAG multiple testing method
show-method | Class "closure" for storing the result of the closed testing procedure
show-method | Class "region" for storing the result of the region procedure
structuredHolm | Testing of hypotheses, forming a DAG, by using a variant of Holm's method.
summary-method | Class "DAG" for storing the result of the DAG multiple testing method
summary-method | Class "closure" for storing the result of the closed testing procedure
summary-method | Class "region" for storing the result of the region procedure