# Generated by roxygen2: do not edit by hand

S3method("$<-",gen_tbl)
S3method("[",gen_tbl)
S3method("[",grouped_gen_tbl)
S3method("[[<-",gen_tbl)
S3method("[[<-",grouped_gen_tbl)
S3method("show_loci<-",tbl_df)
S3method("show_loci<-",vctrs_bigSNP)
S3method(arrange,gen_tbl)
S3method(arrange,grouped_gen_tbl)
S3method(augment,gt_dapc)
S3method(augment,gt_pca)
S3method(augment,q_matrix)
S3method(augment_loci,gt_pca)
S3method(autoplot,gt_admix)
S3method(autoplot,gt_cluster_pca)
S3method(autoplot,gt_dapc)
S3method(autoplot,gt_pca)
S3method(autoplot,gt_pcadapt)
S3method(autoplot,q_matrix)
S3method(autoplot,qc_report_indiv)
S3method(autoplot,qc_report_loci)
S3method(c,gt_admix)
S3method(cbind,gen_tbl)
S3method(count_loci,tbl_df)
S3method(count_loci,vctrs_bigSNP)
S3method(dplyr_col_modify,grouped_gen_tbl)
S3method(dplyr_reconstruct,gen_tbl)
S3method(dplyr_reconstruct,grouped_gen_tbl)
S3method(dplyr_row_slice,grouped_gen_tbl)
S3method(filter,gen_tbl)
S3method(filter,grouped_gen_tbl)
S3method(format,vctrs_bigSNP)
S3method(gen_tibble,character)
S3method(gen_tibble,matrix)
S3method(group_by,gen_tbl)
S3method(indiv_het_obs,tbl_df)
S3method(indiv_het_obs,vctrs_bigSNP)
S3method(indiv_inbreeding,grouped_df)
S3method(indiv_inbreeding,tbl_df)
S3method(indiv_inbreeding,vctrs_bigSNP)
S3method(indiv_missingness,tbl_df)
S3method(indiv_missingness,vctrs_bigSNP)
S3method(indiv_ploidy,tbl_df)
S3method(indiv_ploidy,vctrs_bigSNP)
S3method(is_loci_table_ordered,tbl_df)
S3method(is_loci_table_ordered,vctrs_bigSNP)
S3method(loci_alt_freq,grouped_df)
S3method(loci_alt_freq,tbl_df)
S3method(loci_alt_freq,vctrs_bigSNP)
S3method(loci_chromosomes,tbl_df)
S3method(loci_chromosomes,vctrs_bigSNP)
S3method(loci_hwe,grouped_df)
S3method(loci_hwe,tbl_df)
S3method(loci_hwe,vctrs_bigSNP)
S3method(loci_ld_clump,tbl_df)
S3method(loci_ld_clump,vctrs_bigSNP)
S3method(loci_maf,grouped_df)
S3method(loci_maf,tbl_df)
S3method(loci_maf,vctrs_bigSNP)
S3method(loci_missingness,grouped_df)
S3method(loci_missingness,tbl_df)
S3method(loci_missingness,vctrs_bigSNP)
S3method(loci_names,tbl_df)
S3method(loci_names,vctrs_bigSNP)
S3method(loci_pi,grouped_df)
S3method(loci_pi,tbl_df)
S3method(loci_pi,vctrs_bigSNP)
S3method(loci_transitions,tbl_df)
S3method(loci_transitions,vctrs_bigSNP)
S3method(loci_transversions,tbl_df)
S3method(loci_transversions,vctrs_bigSNP)
S3method(mutate,gen_tbl)
S3method(mutate,grouped_gen_tbl)
S3method(pop_tajimas_d,grouped_df)
S3method(pop_tajimas_d,tbl_df)
S3method(pop_tajimas_d,vctrs_bigSNP)
S3method(predict,gt_pca)
S3method(print,gt_cluster_pca)
S3method(print,gt_dapc)
S3method(print,gt_pca)
S3method(qc_report_indiv,grouped_df)
S3method(qc_report_indiv,tbl_df)
S3method(qc_report_loci,grouped_df)
S3method(qc_report_loci,tbl_df)
S3method(rbind,gen_tbl)
S3method(show_genotypes,tbl_df)
S3method(show_genotypes,vctrs_bigSNP)
S3method(show_loci,tbl_df)
S3method(show_loci,vctrs_bigSNP)
S3method(show_ploidy,tbl_df)
S3method(show_ploidy,vctrs_bigSNP)
S3method(summary,gt_admix)
S3method(summary,rbind_report)
S3method(summary,vctrs_bigSNP)
S3method(tbl_sum,gen_tbl)
S3method(tidy,gt_dapc)
S3method(tidy,gt_pca)
S3method(tidy,q_matrix)
S3method(ungroup,grouped_gen_tbl)
export("%>%")
export("show_loci<-")
export(augment)
export(augment_loci)
export(autoplot)
export(count_loci)
export(filter_high_relatedness)
export(find_duplicated_loci)
export(gen_tibble)
export(get_p_matrix)
export(get_q_matrix)
export(gt_add_sf)
export(gt_admix_reorder_q)
export(gt_admixture)
export(gt_as_genind)
export(gt_as_genlight)
export(gt_as_geno_lea)
export(gt_as_hierfstat)
export(gt_as_plink)
export(gt_as_vcf)
export(gt_cluster_pca)
export(gt_cluster_pca_best_k)
export(gt_dapc)
export(gt_extract_f2)
export(gt_from_genlight)
export(gt_get_file_names)
export(gt_has_imputed)
export(gt_impute_simple)
export(gt_impute_xgboost)
export(gt_load)
export(gt_order_loci)
export(gt_pca_autoSVD)
export(gt_pca_partialSVD)
export(gt_pca_randomSVD)
export(gt_pcadapt)
export(gt_pseudohaploid)
export(gt_roh_window)
export(gt_save)
export(gt_set_imputed)
export(gt_snmf)
export(gt_update_backingfile)
export(gt_uses_imputed)
export(indiv_het_obs)
export(indiv_inbreeding)
export(indiv_missingness)
export(indiv_ploidy)
export(is_loci_table_ordered)
export(load_example_gt)
export(loci_alt_freq)
export(loci_chromosomes)
export(loci_hwe)
export(loci_ld_clump)
export(loci_maf)
export(loci_missingness)
export(loci_names)
export(loci_pi)
export(loci_transitions)
export(loci_transversions)
export(nwise_pop_pbs)
export(pairwise_allele_sharing)
export(pairwise_grm)
export(pairwise_ibs)
export(pairwise_king)
export(pairwise_pop_fst)
export(pop_fis)
export(pop_fst)
export(pop_gene_div)
export(pop_global_stats)
export(pop_het_exp)
export(pop_het_obs)
export(pop_tajimas_d)
export(q_matrix)
export(qc_report_indiv)
export(qc_report_loci)
export(rbind_dry_run)
export(read_q_files)
export(scale_fill_distruct)
export(select_loci)
export(select_loci_if)
export(show_genotypes)
export(show_loci)
export(show_ploidy)
export(snp_allele_sharing)
export(snp_ibs)
export(snp_king)
export(theme_distruct)
export(tidy)
export(upset_plot)
export(windows_indiv_roh)
export(windows_nwise_pop_pbs)
export(windows_pairwise_pop_fst)
export(windows_pop_tajimas_d)
export(windows_stats_generic)
import(dplyr)
import(tibble)
importFrom(Rcpp,sourceCpp)
importFrom(dplyr,"%>%")
importFrom(foreach,"%do%")
importFrom(generics,augment)
importFrom(generics,tidy)
importFrom(ggplot2,autoplot)
importFrom(patchwork,plot_layout)
importFrom(rlang,":=")
useDynLib(tidypopgen, .registration = TRUE)
