R: Modeling Longitudinal Antibody Responses to Infection

# Modeling Longitudinal Antibody Responses to Infection

## Documentation for package ‘serodynamics’ version 0.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

as_case_data | Convert data into 'case_data'
autoplot.case_data | Plot case data
initsfunction | JAGS chain initialization function
load_data | load and format data
nepal_sees | SEES Typhoid data
nepal_sees_jags_output | SEES Typhoid run_mod jags output
plot_jags_dens | Density Plot Diagnostics
plot_jags_effect | Plot Effective Sample Size Diagnostics
plot_jags_Rhat | Rhat Plot Diagnostics
plot_jags_trace | Trace Plot Diagnostics
plot_predicted_curve | Generate Predicted Antibody Response Curves (Median + 95% CI)
postprocess_jags_output | Postprocess JAGS output
post_summ | Summary Table of Jags Posterior Estimates
prep_data | prepare data for JAGs
prep_priors | Prepare priors
run_mod | Run Jags Model
serodynamics_example | Get path to an example file
sim_case_data | Simulate longitudinal case follow-up data from a homogeneous population