SAM                     Significance analysis of microarrays - simple
                        user interface
SAMseq                  Significance analysis of sequencing data -
                        simple user interface
runSAM                  Run the sam webapp
samr                    Significance analysis of microarrays
samr.assess.samplesize
                        Assess the sample size for a SAM analysis
samr.assess.samplesize.plot
                        Make a plot of the results from
                        samr.assess.samplesize
samr.compute.delta.table
                        Compute delta table for SAM analysis
samr.compute.siggenes.table
                        Compute significant genes table
samr.estimate.depth     estimate the sequencing depth
samr.missrate           Estimate the miss rate table for a SAM analysis
samr.norm.data          output normalized sequencing data
samr.plot               Make Q-Q plot for SAM analysis
samr.pvalues.from.perms
                        Report estimated p-values for each gene, from a
                        SAM analysis
samr.tail.strength      Estimate tail strength for a dataset, from a
                        SAM analysis
