control_fn              Create list of control options (to pass to
                        'emuFit()')
dpseudohuber_median_dx
                        Calculate the derivative to the pseudo-Huber
                        smoothed median
emuFit                  Fit radEmu model
emuFit_check            Runs checks for appropriate arguments before
                        running 'emuFit()'
emuFit_micro            Fit radEmu model. Called by emuFit
emuFit_micro_penalized
                        Fit radEmu model with Firth penalty
fit_null                fits model with B_kj constrained to equal
                        g(B_k) for constraint fn g
fit_null_discrete       fits model with B_kj constrained to equal
                        g(B_k) for constraint fn g, for a symmetric
                        constraint with a discrete design
fit_null_scc            fits model with B_kj constrained to equal
                        g(B_k) for constraint fn g, for a single
                        category constraint
fit_null_symmetric      fits model with B_kj constrained to equal
                        g(B_k) for constraint fn g, for a symmetric
                        constraint
fit_null_symmetric_subset
                        fits model with B_kj constrained to equal
                        g(B_k) for constraint fn g, for a symmetric
                        constraint
make_design_matrix      Generates the design matrix for a given
                        'formula' and 'data' object
make_diagnostics_plots
                        makes plots to investigate convergence of
                        estimation under null hypothesis
make_reference_constraints
                        Make lists of constraint functions and their
                        gradients when using a reference taxon
plot.emuFit             Plotting function
power_model             A fitted GLM model for the power of radEmu to
                        reject a truly false null hypothesis
print.emuFit            Print function
pseudohuber_median      Calculate the pseudo-Huber smoothed median
score_test              Run robust score test
simulate_data           Data simulation function
wirbel_otu              mOTU table from Wirbel et al. meta-analysis of
                        fecal metagenomes.
wirbel_otu_small        subset of mOTU table from Wirbel et al.
                        meta-analysis of fecal metagenomes.
wirbel_sample           Covariates from Wirbel et al. meta-analysis of
                        fecal metagenomes.
wirbel_sample_small     Covariates from Wirbel et al. meta-analysis of
                        fecal metagenomes, for a subset of samples.
wirbel_taxonomy         Taxonomy information for mOTUs from Wirbel et
                        al. meta analysis.
