R: Phylogenetic Tree Models and the Power of Tree Shape Statistics

# Phylogenetic Tree Models and the Power of Tree Shape Statistics

## Documentation for package ‘poweRbal’ version 0.1.0

- DESCRIPTION file.

## Help Pages

computeAccRegion | Functions for computing the region of acceptance
enum2cladewise | Function to modify the node enumeration in rooted binary trees
genAldousBetaTree | Generation of rooted binary trees under Aldous' beta splitting model
genAltBirthDeathTree | Generation of rooted binary trees under the alternative birth-death model
genBiSSETree | Generation of rooted binary trees under the BiSSE model
genCombTree | Generation of the comb or caterpillar tree
genDensityTree | Generation of rooted binary trees under the density model
genETMTree | Generation of rooted binary trees under the equiprobable-types-model (ETM)
genFordsAlphaTree | Generation of rooted binary trees under Ford's alpha model
genGFBTree | Generation of the greedy from the bottom tree
genGrowTree | Generation of rooted binary trees under tree growing models (no extinction)
genMBTree | Generation of the maximally balanced tree
genPDATree | Generation of rooted binary trees under the PDA model
genTrees | Generation of rooted binary trees under a given tree model
genYuleTree | Generation of rooted binary trees under the Yule model
getAccRegion | Functions for computing the region of acceptance
getAccRegion_exact | Functions for computing the region of acceptance
getAccRegion_sampled | Functions for computing the region of acceptance
getAllTSS | Get information on included tree shape statistics
getPowerMultTSS | Function for computing the power given the region of acceptance
getTSScolors | Get information on included tree shape statistics
getTSSdata | Functions for generating the TSS data under a tree model
getTSSdata_trees | Functions for generating the TSS data under a tree model
getTSSnames | Get information on included tree shape statistics
getTSSonly_bin | Get information on included tree shape statistics
getTSSsafe_n | Get information on included tree shape statistics
getTSSsimple | Get information on included tree shape statistics
getTSStype | Get information on included tree shape statistics
plot.poweRbal_data | Plot method for poweRbal_data objects
powerComp | Comparison of the power of TSS under different models
powerComp_RegAcc | Comparison of the power of TSS under different models
print.poweRbal_data | Print and summary method for poweRbal_data objects
showTSSdata | Function for displaying TSS distributions
summary.poweRbal_data | Print and summary method for poweRbal_data objects
tssInfo | Tree shape statistics