multiSA-package	multiSA-package
%*%,ad,matrix-method	AD
AD	AD
calc_eqdist	calc_eqdist
calc_F	calc_F
calc_fsel_age	conv_selpar
calc_growth	calc_growth
calc_HSP	calc_POP
calc_index	calc_index
calc_init_population	calc_init_population
calc_isel_age	conv_selpar
calc_LAK	calc_LAK
calc_nextN	calc_nextN
calc_NPR	calc_phi_simple
calc_phi_project	calc_phi_project
calc_phi_simple	calc_phi_simple
calc_POP	calc_POP
calc_population	calc_population
calc_recruitment	calc_recruitment
calc_sel_len	conv_selpar
check_data	check_data
check_parameters	make_parameters
CondExpEq	CondExpLt
CondExpGe	CondExpLt
CondExpGt	CondExpLt
CondExpLe	CondExpLt
CondExpLt	CondExpLt
conv_mov	conv_mov
conv_selpar	conv_selpar
conv_Sigma	conv_Sigma
DCKMR-class	DCKMR-class
Dfishery-class	Dfishery-class
Dlabel-class	Dlabel-class
Dmodel-class	Dmodel-class
Dstock-class	Dstock-class
Dsurvey-class	Dsurvey-class
Dtag-class	Dtag-class
fit_MSA	fit_MSA
get_MSAdata	get_MSAdata
get_sdreport	get_sdreport
like_CKMR	like_CKMR
like_comp	like_comp
make_map	make_parameters
make_parameters	make_parameters
matmul	AD
MSAassess-class	MSAassess-class
MSAdata-class	MSAdata-class
multiSA	multiSA-package
optimize_RTMB	optimize_RTMB
plot,MSAassess-method	profile
plot-MSA-data	plot-MSA-data
plot-MSA-state	plot-MSA-state
plot.MSAprof	profile
plot.MSAretro	retrospective
plot_B	plot-MSA-state
plot_CAA	plot-MSA-data
plot_CAL	plot-MSA-data
plot_catch	plot-MSA-data
plot_Ffleet	plot-MSA-state
plot_Fstock	plot-MSA-state
plot_IAA	plot-MSA-data
plot_IAL	plot-MSA-data
plot_index	plot-MSA-data
plot_mov	plot-MSA-state
plot_N	plot-MSA-state
plot_R	plot-MSA-state
plot_Rdev	plot-MSA-state
plot_recdist	plot-MSA-state
plot_S	plot-MSA-state
plot_SC	plot-MSA-data
plot_self	plot-MSA-state
plot_seli	plot-MSA-state
plot_selstock	plot-MSA-state
plot_SRR	plot-MSA-state
plot_tagmov	plot-MSA-data
plot_V	plot-MSA-state
posfun	posfun
prior	prior
prior_h	prior
prior_M	prior
prior_q	prior
profile	profile
profile,MSAassess-method	profile
profile.MSAassess	profile
report	report
report,MSAassess-method	report
report.MSAassess	report
report.MSAretro	retrospective
residuals	residuals
residuals,MSAassess-method	residuals
retrospective	retrospective
sapply2	sapply2
simulate	simulate
simulate,MSAassess-method	simulate
simulate.MSAassess	simulate
softmax	softmax
summary	summary
summary,MSAassess-method	summary
summary.MSAretro	retrospective
