R: Calculations of Luck in Structured Population Models

# Calculations of Luck in Structured Population Models

## Documentation for package ‘luckieR’ version 0.1.0

- DESCRIPTION file.
- Package NEWS.

## Help Pages

calcDistLRO | Distribution of lifetime reproductive output
calcDistLRONoEnv | Distribution of lifetime reproductive output
calcDistLROPostBreeding | Distribution of lifetime reproductive output
calcDistLROPostBreedingNoEnv | Distribution of lifetime reproductive output
calcDistOffspringCohort | The distribution of offspring types in a cohort produced at the stable population distribution
calcMoments | Calculates the mean, the 2nd and 3rd non-central moments, and the skewness of a lifetime reward
distLifespanCondR2 | Distribution of lifespan conditional on LRO
distLifespanCondR2NoEnv | Distribution of lifespan conditional on LRO
distLifespanCondR2PostBreeding | Distribution of lifespan conditional on LRO
distLifespanCondR2PostBreedingNoEnv | Distribution of lifespan conditional on LRO
firstBreed | Probability of breeding and age at first breeding
flatten | Convert 4-d array to matrix
fundamental_matrix | Calculate the fundamental matrix
makeCondFailureKernel | Calculates the probability of not becoming successful before death and the transition kernel conditional on not becoming successful before death.
makeCondKernel | calculates the probability of becoming successful before death and the transition kernel conditional on becoming successful before death.
makeM | Make megamtrix
makeMCondLROThreshold | Utility function for calculating a kernel conditional on having LRO meeting or exceeding a threshold
makeMCondLROThresholdPostBreeding | Utility function for calculating a kernel conditional on having LRO meeting or exceeding a threshold
makePCondBreedDef3 | Utility function for calculating a kernel conditional on breeding.
makePDef3 | Utility function for calculating a kernel conditional on breeding.
make_AxT | Make the size x #kids transition matrix
meanConditionalLifespan | Mean Conditional Lifespan
meanConditionalTimes | Compute conditional time to arriving in a state
meanLifespan | Calculate mean lifespan
meanLRO | Calculate mean lifetime reproductive output (LRO)
mk_B | Make B matrix
mk_BPostBreeding | Make B matrix for a post-breeding census
partitionVarSkewnessEnvVar | Partitions variance and skewness of LRO
partitionVarSkewnessEnvVarAndTraits | Partitions variance and skewness of LRO
partitionVarSkewnessEnvVarPostBreeding | Partitions variance and skewness of LRO
partitionVarSkewnessNoEnvVar | Partitions variance and skewness of LRO
partitionVarSkewnessNoEnvVarPostBreeding | Partitions variance and skewness of LRO for a post-breeding census
popMeanVar | Population mean and variance of any attribute
probRepro | Probability of reproducing at least once, based on starting state
probTraitCondLRO | Distribution of a trait conditional on LRO
probTraitCondLRONoEnv | Distribution of a trait conditional on LRO
probTraitCondLROPostBreeding | Distribution of a trait conditional on LRO
probTraitCondLROPostBreedingNoEnv | Distribution of a trait conditional on LRO
p_xT | Helper function used for calculating size x #kids transition matrices
skewLifespan | Calculate skewness of lifespan
skewLRO | Calculate skew in lifetime reproductive output
stable_dist | Calculate the stable state distribution
traitAve | Calculates an average over a user-provided distribution
traitMu3 | Calculates the third central moment over a user-provided distribution
traitVar | Calculates a variance over a user-provided distribution
unfold | Convert a megamatrix to an array
unvec | Convert a vector to a matrix
varConditionalLifespan | Variance of Conditional Lifespan
varConditionalTimes | Variance in conditional time to reach state i from state j
varLifespan | Calculate variance of lifespan
varLRO | Calculate variance in lifetime reproductive output
vec | Convert a matrix to a vector