R: Handling HL7 FHIR® Resources in R

# Handling HL7 FHIR® Resources in R

## Documentation for package ‘fhircrackr’ version 2.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

as_fhir | Coerce character vector to fhir_bundle_list
example_bundles1 | Toy example bundles for multiple entries
example_bundles2 | Toy example bundles for multiple entries
example_bundles3 | Toy example bundles for multiple entries
example_bundles4 | Toy example bundles for multiple entries
example_bundles5 | Toy example bundles for multiple entries
example_bundles6 | Toy example bundles for multiple entries
example_bundles7 | Toy example bundles for multiple entries
example_bundles_empty | Toy example bundles for multiple entries
example_resource1 | Toy examples to POST/PUT on a server
example_resource2 | Toy examples to POST/PUT on a server
example_resource3 | Toy examples to POST/PUT on a server
fhir_authenticate | Create token for Authentication
fhir_body | Create fhir_body object
fhir_body,character,character-methods | Create fhir_body object
fhir_body,list,character-methods | Create fhir_body object
fhir_body,list,missing-methods | Create fhir_body object
fhir_body-class | An s4 class to represent a body for a POST to a FHIR server
fhir_body-method | Create fhir_body object
fhir_build_bundle | Build a FHIR bundle
fhir_build_bundle-method | Build a FHIR bundle
fhir_build_resource | Build a single FHIR resource
fhir_bundle-class | An S4 class to represent FHIR bundles
fhir_bundle_list | Create fhir_bundle_list object
fhir_bundle_list-class | S4 class to represent a list of FHIR bundles
fhir_bundle_serialized-class | An S4 class to represent a FHIR bundle in serialized form
fhir_bundle_xml | Create fhir_bundle_xml object
fhir_bundle_xml-class | An S4 class to represent a FHIR bundle in xml form
fhir_canonical_design | Retrieve design of last call to fhir_crack
fhir_capability_statement | Get capability statement
fhir_cast | Cast table with multiple entries This function divides multiple entries in a compact indexed table as produced by 'fhir_crack()' into separate columns.
fhir_collapse | Collapse multiple entries
fhir_columns | Create fhir_columns object
fhir_columns-class | A S4 class to represent columns in a fhir_table_description
fhir_columns-method | Create fhir_columns object
fhir_common_columns | Find common columns
fhir_count_resource | Get Resources' Counts
fhir_crack | Flatten list of FHIR bundles
fhir_crack-method | Flatten list of FHIR bundles
fhir_current_request | Return FHIR search request used in last call to 'fhir_search()' or 'fhir_url()'
fhir_design | Create a fhir_design object
fhir_design-class | A S4 class containing a design for 'fhir_crack()'
fhir_design-method | Create a fhir_design object
fhir_df_list-class | List of data.frames as returned by 'fhir_crack()'
fhir_dt_list-class | List of data.tables as returned by 'fhir_crack()'
fhir_get_resources_by_ids | Get Resources by their IDs
fhir_get_resource_ids | Get Resources' IDs
fhir_is_empty | Check if Bundle/Bundlelist is empty
fhir_is_empty-method | Check if Bundle/Bundlelist is empty
fhir_load | Load bundles from xml-files
fhir_load_design | Load design from xml
fhir_melt | Melt multiple entries
fhir_melt_all | Melt all columns with multiple entries
fhir_melt_internal | Internal function to melt multiple entries in a data.table
fhir_next_bundle_url | Next Bundle's URL
fhir_post | POST to a FHIR server
fhir_post-method | POST to a FHIR server
fhir_put | PUT to a FHIR server
fhir_recent_http_error | Return most recent http error from 'fhir_search()'
fhir_request | fhir_request
fhir_resource-class | An S4 class to represent FHIR resources
fhir_resource_serialized-class | An S4 class to represent a FHIR resource in serialized form
fhir_resource_type | Create fhir_resource_type object
fhir_resource_type-class | A representation of a FHIR resource type
fhir_resource_xml | Create fhir_resource_xml object
fhir_resource_xml-class | An S4 class to represent a FHIR resource in xml form
fhir_resource_xml-method | Create fhir_resource_xml object
fhir_rm_div | Remove html elements
fhir_rm_indices | Remove indices from data.frame/data.table
fhir_rm_tag | Remove a certain xml tag
fhir_rm_tag-method | Remove a certain xml tag
fhir_sample_resources | Randomly sample resources from a FHIR server
fhir_sample_resources_by_ids | Download a random sample of resources from a vector of resource IDs.
fhir_save | Save FHIR bundles as xml-files
fhir_save_design | Write design to xml
fhir_search | Download FHIR search result
fhir_serialize | Serialize a fhir_bundle, fhir_bundle_list or fhir_resource
fhir_serialize-method | Serialize a fhir_bundle, fhir_bundle_list or fhir_resource
fhir_table_description | Create fhir_table_description object
fhir_table_description-class | A S4 class describing the form of a table produced by 'fhir_crack()'
fhir_tree | Represent a wide cast table as a tree
fhir_unserialize | Unserialize a fhir_bundle, fhir_bundle_list or fhir_resource
fhir_unserialize-method | Unserialize a fhir_bundle, fhir_bundle_list or fhir_resource
fhir_url | Create FHIR URL
fhir_url-class | An S4 object to represent a URL for a FHIR server
fhir_url-method | Create FHIR URL
fhir_xpath_expression | Create fhir_xpath_expression
fhir_xpath_expression-class | An S4 class for xpath_expressions Objects of this class are essentially character vectors, but can only be valid XPath (1.0) expressions. They are mostly used in the 'fhir_columns' class.
medication_bundles | Exemplary FHIR bundles
pastep | Concatenate paths
paste_paths | Concatenate two paths
patient_bundles | Exemplary FHIR bundles
transaction_bundle_example | Toy examples to POST/PUT on a server