A.matr                  Additive relationship matrix
DT_augment              DT_augment design example.
DT_big                  Big GxE Quantitative Genetic Simulation
DT_btdata               Blue Tit Data for a Quantitative Genetic
                        Experiment
DT_cornhybrids          Corn crosses and markers
DT_cpdata               Genotypic and Phenotypic data for a CP
                        population
DT_envs                 Simulated phenotypic records for a set of 100
                        environments and 200 entries.
DT_example              Broad sense heritability calculation.
DT_expdesigns           Data for different experimental designs
DT_fulldiallel          Full diallel data for corn hybrids
DT_gryphon              Gryphon data from the Journal of Animal Ecology
DT_h2                   Broad sense heritability calculation.
DT_halfdiallel          half diallel data for corn hybrids
DT_ige                  Data to fit indirect genetic effects.
DT_legendre             Simulated data for random regression
DT_mohring              Full diallel data for corn hybrids
DT_polyploid            Genotypic and Phenotypic data for a potato
                        polyploid population
DT_rice                 Rice lines dataset
DT_sleepstudy           Reaction times in a sleep deprivation study
DT_technow              Genotypic and Phenotypic data from single cross
                        hybrids (Technow et al.,2014)
DT_wheat                wheat lines dataset
DT_yatesoats            Yield of oats in a split-block experiment
I.matr                  Identity relationship matrix
LD.decay                Calculation of linkage disequilibrium decay
add.diallel.vars        add.diallel.vars
adiag1                  Binds arrays corner-to-corner
atcg1234                Letter to number converter
atcg1234BackTransform   Letter to number converter
bathy.colors            Generate a sequence of colors for plotting
                        bathymetric data.
bbasis                  Function for creating B-spline basis functions
                        (Eilers & Marx, 2010)
build.HMM               Build a hybrid marker matrix using parental
                        genotypes from inbred individuals
enhancer                Mixed Effect Model Enhancing Functions
imputev                 Imputing a numeric or character vector
jet.colors              Generate a sequence of colors alog the jet
                        colormap.
leg                     Legendre polynomial matrix
logspace                Decreasing logarithmic trend
manhattan               Creating a manhattan plot
map.plot                Creating a genetic map plot
neMarker                Effective population size based on marker
                        matrix
overlay                 Overlay Matrix
propMissing             Proportion of missing data
redmm                   Reduced Model Matrix
replaceValues           Replace the values of a vector
rrm                     reduced rank matrix
simGECorMat             Create a GE correlation matrix for simulation
                        purposes.
simage                  Image of sparsity between two variables
simage2                 Shortcut to sparse matrix image
stan                    Standardize a vector of values in range 0 to 1
tps                     Get Tensor Product Spline Mixed Model Incidence
                        Matrices
transp                  Creating color with transparency
wald.test               Wald Test for Model Coefficients
