Col.Meta                Analyte Annotations, Col.Meta, and Row Info
SeqId                   Working with SomaLogic SeqIds
SomaDataIO-deprecated   Deprecated function(s) of the 'SomaDataIO'
                        package
SomaScanObjects         Example Data and Objects
adat-helpers            Helpers to Extract Information from an ADAT
adat2eSet               Convert ADAT to ExpressionSet Object
addAttributes           Add Attributes to 'soma_adat' Objects
addClass                Add a Class to an Object
calcOutlierMap          Calculate MAD Outlier Map
calc_eLOD               Calculate Estimated Limit of Detection (eLOD)
cleanNames              Clean Up Character String
diffAdats               Diff Two ADAT Objects
getAnalyteInfo          Get Analyte Annotation Information
getAnalytes             Get Analytes
getOutlierIds           Get Flagged Ids From MAD Outlier Map
groupGenerics           Group Generics for 'soma_adat' Class Objects
is_intact_attr          Are Attributes Intact?
is_seqFormat            Test 'AptName' Format
lift_adat               Lift an ADAT Between Assay Versions
loadAdatsAsList         Load ADAT files as a list
medianNormalize         Perform Median Normalization on Study Samples
merge_clin              Merge Clinical Data into SomaScan
params                  Common Parameters in 'SomaDataIO'
parseHeader             SomaLogic ADAT parser
pivotExpressionSet      Convert to Long Format
plot.Map                Plot Image Maps
preProcessAdat          Pre-Process an ADAT Object for Analysis
read_adat               Read (Load) SomaLogic ADATs
read_annotations        Import a SomaLogic Annotations File
reverseMedianNormalize
                        Reverse Median Normalization from Study Samples
rownames                Helpers for Working With Row Names
soma_adat               The 'soma_adat' Class and S3 Methods
transform               Scale Transform 'soma_adat' Columns/Rows
updateColMeta           Update Col.Meta Attribute to Match Annotations
                        Object
write_adat              Write an ADAT to File
