R: Assess Study Cohorts Using a Common Data Model

# Assess Study Cohorts Using a Common Data Model

## Documentation for package ‘PhenotypeR’ version 0.5.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

addCodelistAttribute | Adds the cohort_codelist attribute to a cohort
clinicalDescriptionSpecification | Clinical description specification
codelistDiagnostics | Run codelist-level diagnostics
cohortDiagnostics | Run cohort-level diagnostics
databaseDiagnostics | Database diagnostics
dataSourceDescriptionSpecification | Data source description specification
downloadClinicalDescriptionTemplate | Download a Clinical Description Template
downloadDatabaseDescriptionTemplate | Download a Clinical Description Template
draftClinicalDescription | Draft clinical descriptions using an LLM
getCohortExpectations | Get cohort expectations using an LLM
importClinicalDescription | Import clinical descriptions
importDatabaseDescription | Import database descriptions
phenotypeDiagnostics | Phenotype a cohort
populationDiagnostics | Population-level diagnostics
shinyClinicalDescriptions | Shiny app to create clinical descriptions for contextualising diagnostic results
shinyDataSourceDescriptions | Shiny app to create data source descriptions for contextualising diagnostic results
shinyDiagnostics | Create a shiny app summarising your phenotyping results
tableCohortExpectations | Create a table summarising cohort expectations