AllDownstreamSubids     Find All Downstream SUBIDs
AllUpstreamSubids       Find All Upstream SUBIDs
AnnualRegime            Calculate annual regimes
BarplotUpstreamClasses
                        Bar plots of upstream-averaged classes of HYPE
                        sub-basins
BoxplotSLCClasses       Box plots of SLC distributions
CleanSLCClasses         Clean Soil-Landuse classes (SLCs) from small
                        fractions
CompareFiles            Compare HYPE model files to identify any
                        differences.
ConvertDischarge        Calculate Specific runoff from volumetric
                        discharge and vice versa
CreateOptpar            Create an optpar list
CustomColors            Custom color ramp palettes
DirectUpstreamSubids    Find Direct Upstream SUBIDs, with Flow
                        Fractions
EquallySpacedObs        Create an equally spaced time series from
                        irregular observations
ExtractFreq             Extract quantiles for use in a frequency
                        distribution plot, e.g. a flow duration curve
ExtractStats            Extract statistics from time series
GOF                     Goodness of Fit Functions
GroupSLCClasses         Calculate grouped sums for SLC classes in a
                        GeoData file
GwRetention             Calculate groundwater retention of nutrients
HeadwaterSubids         Find all headwater SUBIDs of a model domain
HypeAttrAccess          Quickly query and set HYPE-specific attributes
HypeDataExport          Write HYPE data files
HypeDataImport          Read HYPE data files
HypeGeoData             HypeGeoData data frames
HypeMultiVar            HypeMultiVar arrays
HypeSingleVar           HypeSingleVar arrays
HypeSubidChecks         Check HYPE SUBID properties
HypeXobs                HypeXobs data frames
InfoManipulation        Functions to Manipulate HYPE Info Files
MapRegionalSources      Map regional irrigation source connection as
                        spatial lines
MergeObs                Merge two HYPE observation data frames
MergeXobs               Merge two Xobs data frames
NSE.HypeSingleVar       Nash-Sutcliffe Efficiency
OptimisedClasses        Get optimized classes from an imported
                        optpar.txt file
OutletIds               Find Outlet IDs
OutletNearObs           Find outlet-near observations in HYPE
                        observation data files.
OutletSubids            Find all Outlet SUBIDs of a model domain
PartyParrot             Create a Party Parrot.
PlotAnnualRegime        Plot annual regimes
PlotBasinOutput         Plot a suite of time series plots from a HYPE
                        basin output file
PlotBasinSummary        Plot a summary of model results for a single
                        sub-basin
PlotDurationCurve       Plot duration curves
PlotEvaluationMaps      Function for plotting up to two HYPE simulation
                        results in maps.
PlotMapOutput           Plot function for HYPE map results.
PlotMapPoints           Plot function for mapped point information
PlotParValues           Plot HYPE model parameter values.
PlotPerformanceByAttribute
                        Plot model performance by SUBID attributes
PlotSimObsRegime        Plot annual regimes of simulated and observed
                        variables
PlotSubbasinRouting     Plot HYPE model subbasin routing.
ReadBasinOutput         Read a Basin Output File
ReadClassData           Read a 'ClassData.txt' File
ReadDescription         Read a 'description.txt' file
ReadGeoClass            Read a 'GeoClass.txt' File
ReadGeoData             Read a 'GeoData.txt' file
ReadInfo                Read an 'info.txt' file
ReadMapOutput           Read a Map Output File
ReadObs                 Read HYPE observation data files
ReadOptpar              Read an 'optpar.txt' file
ReadPar                 Read a 'par.txt' file
ReadPmsf                Read a 'pmsf.txt' file
ReadSimass              Read a 'simass.txt' file
ReadSubass              Read a 'subassX.txt' file
ReadTimeOutput          Read a Time Output File
ReadWsOutput            Read optimization simulation results
ReadXobs                Read an 'Xobs.txt' file
RescaleSLCClasses       Re-scale SLC classes in a GeoData data frame
RunHYPE                 Run HYPE model
ScaleAquiferData        Scale 'AquiferData.txt' files to different
                        model time steps
ScaleFloodData          Scale 'FloodData.txt' files to different model
                        time steps
ScalePar                Scale 'par.txt' files to different model time
                        step
SimToPar                HYPE Calibration Outputs to par.txt
SortGeoData             Sort a GeoData dataframe in downstream order
SubidAttributeSummary   Summarize subbasin attributes
SumSLCClasses           Calculate sums of SLC classes in a GeoData file
SumUpstreamArea         Calculate upstream area sums
UpstreamGeoData         Calculate upstream sums and averages of
                        selected GeoData contents
UpstreamGroupSLCClasses
                        Calculate area-weighted upstream averages of
                        grouped SLC class fractions.
UpstreamPointSources    Summarize point source emissions of all
                        upstream areas
UpstreamSLCClasses      Calculate SLC class fractions of all upstream
                        areas
VariableLookup          Lookup Functions For HYPE Variables
VisualizeMapOutput      Shiny App for visualizing HYPE MapOutputs.
VisualizeMapPoints      Shiny App for visualizing Mapped Point
                        Information.
WriteBasinOutput        Write a basin output '[SUBID].txt' file
WriteGeoClass           Write a 'GeoClass.txt' file
WriteGeoData            Write a 'GeoData.txt' file
WriteHarmonizedData     Write a Harmonized Data File
WriteHarmonizedSpatialDescription
                        Write a Harmonized Spatial Description File
WriteInfo               Write a 'info.txt' File
WriteMapOutput          Write a 'mapXXXX.txt' file
WriteObs                Write 'Pobs.txt', 'Tobs.txt', 'Qobs.txt', and
                        other observation data files
WriteOptpar             Write an 'optpar.txt' File
WritePar                Write a 'par.txt' File
WritePmsf               Write a 'pmsf.txt' file
WriteTimeOutput         Write a 'timeXXXX.txt' file
WriteXobs               Write an 'Xobs.txt' File
distinctColorPalette    Generate optimally distinct color palettes
merge                   Merge HypeGeoData object
pbias.HypeSingleVar     Percent bias
r                       Pearson product-moment correlation coefficient
                        r
