ABI                     Activity balance index (ABI)
DFA                     Detrended Fluctuation Analysis
GGIR                    Shell function for analysing an accelerometer
                        dataset.
GGIR-package            A package to process multi-day raw
                        accelerometer data
POSIXtime2iso8601       Convert POSIX to iso8601 timestamp
SSP                     Estimated self-similarity parameter
apply_cosinor_IS_IV_Analyses
                        Apply Cosinor Analyses to time series
create_test_acc_csv     Creates csv data file for testing purposes
create_test_sleeplog_csv
                        Creates csv sleeplog file for testing purposes
data.calibrate          Example output from g.calibrate
data.getmeta            Example output from g.getmeta
data.inspectfile        Example output from g.inspectfile
data.metalong           Metalong object as part of part 1 milestone
                        data
data.ts                 Time series data.frame stored by part 5
g.calibrate             function to estimate calibration error and make
                        recommendation for addressing it
g.getbout               function to calculate bouts from vector of
                        binary classes
g.getmeta               Function to extract meta-data (features) from
                        data in accelerometer file
g.imputeTimegaps        Impute gaps in three axis raw accelerometer
                        data
g.inspectfile           function to inspect accelerometer file for
                        brand, sample frequency and header
g.loadlog               Load and clean sleeplog information
g.part1                 function to load and pre-process acceleration
                        files
g.part2                 function to analyse and summarize pre-processed
                        output from g.part1
g.part3                 Detection of sustained inactivity periods as
                        needed for sleep detection in g.part4.
g.part4                 Labels detected sustained inactivity periods by
                        g.part3 as either part of the Sleep Period Time
                        window or not
g.part5                 Merge output from physical activity and sleep
                        analysis into one report
g.part6                 Perform temporal pattern analyses
g.plot5                 Generate user-friendly visual report. The first
                        part of the report summarizes important daily
                        metrics in bar plot format.  The second part of
                        the report shows the raw data and annotations
                        in 24-hr periods. Angle-z is shown with sleep
                        annotations during the SPT (sleep period time)
                        window.  ENMO is shown with daytime inactivity
                        and PA (physical activity) annotations in the
                        lower section of each 24-hr plot. The PA
                        annotations are based on a 10 minute bout
                        metric and 80 of a 10 minute bout of MVPA.
                        Vigorous PA is a short window of time above
                        threshold.vig that is part of a bout of MVPA.
                        Light PA is a short window of time above
                        threshold.lig that is part of a bout of light
                        PA.
g.report.part2          Generate report from milestone data produced by
                        g.part2
g.report.part4          Generate report from milestone data produced by
                        g.part4
g.report.part5          Generate report from milestone data produced by
                        g.part5
g.report.part5_dictionary
                        Generate data dictionary for reports from
                        milestone data produced by g.part5
g.report.part6          Generate report from milestone data produced by
                        g.part6
g.shell.GGIR            Wrapper function around function GGIR
inspect_binFile_brand   Identify the Device Brand from a Binary File
is.ISO8601              Check whether character timestamp is in iso8601
                        format.
iso8601chartime2POSIX   Convert iso8601 timestamps to POSIX timestamp
load_params             Load default parameters
part6AlignIndividuals   part6AlignIndividuals
part6PairwiseAggregation
                        part6PairwiseAggregation
read.myacc.csv          Read custom csv files with accelerometer data
visualReport            Generate visualisation of time series produced
                        by part 5.
