AlleleID,CloneID,AlleleSequence,Sample_11,Sample_12,Sample_13,Sample_14,Sample_15,Sample_16,Sample_17,Sample_18,Sample_19,Sample_20
chr1.1_001590881|Ref_0001,chr1.1_001590881,CTGTGAGAAGCACTTCATCTGAATTAAGCAATCCTTTTCCCCTAAGTAAGAGTTTGTAATAGGTATTATCAAACATTCTTG,0,0,0,20,9,17,16,14,6,5
chr1.1_001938036|AltMatch_0003,chr1.1_001938036,CAGTGTTATCAGCCACACATGTAAATTGATGCTTTTATCTGGACTTGTTAAGTATACTGACAGCTTATC,48,0,0,34,36,33,0,26,0,0
chr1.1_001938036|Alt_0002,chr1.1_001938036,CAGTGTTATCAGCCACACATGTAAATTGATGCTTTTCTCTGGACTTGTTTAAGTATACTGACAGCTTATCATGTCTGTTGG,39,0,0,0,75,42,83,0,76,35
chr1.1_001938036|Ref_0001,chr1.1_001938036,CAGTGTTATCAGCCACACATGTAAATTGATTCTTTTCTCTGGACTTGTTTAAGTATACTGACAGCTTATCATGTCTGTTGG,35,149,134,145,37,75,52,106,66,95
chr1.1_002111756|Alt_0002,chr1.1_002111756,GGTAGATAAATTTTACAGATGCTTAAAAGGTTTGCTAAATGGAATTCTGAGTATTGATCCTAAGAAAATCCATGTATAGAT,5,24,24,8,19,11,11,4,6,4
chr1.1_002111756|Ref_0001,chr1.1_002111756,GGTAGATAAATTTTACAGATGCTTAAAAGGTTTGTTAAATGGAATTCTGAGTATTGATCCTAAGAAAATCCATGTATAGAT,55,62,53,167,68,89,164,124,106,113
chr1.1_002341138|Alt_0002,chr1.1_002341138,GACTGTTGGAGTAATTTGCATATCAAAATATCTATATGTGATCACAGGGTTCTTTAAACAGAACATGGAGATTTTGACTTA,6,0,0,0,14,0,0,0,6,0
chr1.1_002341138|Ref_0001,chr1.1_002341138,GACTGTTGGAGTAATTTGCATATCAAAATATCTATATGTGATCACAGGGTACTTTAAACAGAACATGGAGATTTTGACTTA,3,35,33,16,22,34,40,16,29,34
chr1.1_002432574|Alt_0002,chr1.1_002432574,ATACATCCTTCCTATCCTGGATTATCACTGACCAGTTTTCAGGGATGTTTCATCAACAAAATCCTGTCTTATATTACATTC,634,0,1,386,419,430,674,313,398,216
chr1.1_002432574|Ref_0001,chr1.1_002432574,ATACATCCTTCCTATCCTGGATTATCACTGACCACTTTTCAGGGATGTTTCATCAACAAAATCCTGTCTTATATTACATTC,73,466,530,274,293,264,106,177,254,433
chr1.1_002703089|Alt_0002,chr1.1_002703089,CAACCACTTTGCAACCTTGCATGAAACTTTTATTTTCATCTGATATCCTAAACCCACCATTCGCACTGTAGAACCCACAAT,0,151,172,120,125,1,56,1,0,107
chr1.1_002703089|Ref_0001,chr1.1_002703089,CAACCACTTTGCAACCTTGCATGAAACTTTTATCTTCATCTGATATCCTAAACCCACCATTCGCACTGTAGAACCCACAAT,193,127,129,257,289,294,178,200,275,198
chr1.1_002798325|Alt_0002,chr1.1_002798325,TAGAAGTGTATTATATATATCTAACCTAGTATGTTATTTGCATTTGGACAAATTTGTAAAGGCATGGAGAAATTGGAAGGA,9,2,0,9,8,0,0,0,6,2
chr1.1_002798325|Ref_0001,chr1.1_002798325,TAGAAGTGTATTATATATATCTAACCTAGTATTTTATTTGCATTTGGACAAATTTGTAAAGGCATGGAGAAATTGGAAGGA,3,10,10,11,7,13,18,20,5,15
chr1.1_003103125|Alt_0002,chr1.1_003103125,CAGTGATAGCTTATCTCAAGTGATGTAGTTAATTTTTGTTCTCAAACTTTAATAGTAATGGTATTTAAAGTTCTACTTTGA,35,0,0,29,60,40,40,39,15,22
chr1.1_003103125|Ref_0001,chr1.1_003103125,CAGTGATAGCTTATCTCAAGTGATGTAGTTAATTTTTGTTCTCAAACTATAATAGTAATGGTATTTAAAGTTCTACTTTGA,82,188,163,73,85,91,109,118,109,90
chr1.1_003243094|Alt_0002,chr1.1_003243094,AAGGTAAGAACACAACCATTAATGTTATGTTTTTCTGTTTTGTCTTAATGTTTTTATTGATTAGTTACATAATGTCCCATA,2,0,5,18,6,27,0,12,8,3
chr1.1_003243094|Ref_0001,chr1.1_003243094,AAGGTAAGAACACAACCATTAATGTTATGTTATTCTGTTTTGTCTTAATGTTTTTATTGATTAGTTACATAATGTCCCATA,21,38,17,8,11,6,25,5,8,13
chr1.1_003329439|Alt_0002,chr1.1_003329439,GAACTAAGACCAACGTTTAAATACTAAGTTTATACTAATTAGGGTTTATTTTCTGGTTTGTAACACTGCATGTAAAAGTTA,6,6,3,3,3,4,1,1,3,2
chr1.1_003329439|Ref_0001,chr1.1_003329439,GAACTAAGACCAACGTTTAAATACTAAGTTTATCCTAATTAGGGTTTATTTTCTGGTTTGTAACACTGCATGTAAAAGTTA,1,5,3,16,15,13,21,22,7,5
chr1.1_003491884|Alt_0002,chr1.1_003491884,GAGGAAATCGACACTTTAGTTGATTATCTCATTAGCCGTGGTTTTGGCAAGAACTAATTATTAAGAGGTGATATACGATCA,108,69,56,113,81,59,151,39,88,85
chr1.1_003491884|RefMatch_0002,chr1.1_003491884,GAGGAAATCGACACTTTAGTTGATTATCTCCTTAGCCATGGTTTTGGCAAGAACTAATTATTAAGAGGTG,0,0,0,0,0,0,0,1,1,1
chr1.1_003491884|Ref_0001,chr1.1_003491884,GAGGAAATCGACACTTTAGTTGATTATCTCCTTAGCCGTGGTTTTGGCAAGAACTAATTATTAAGAGGTGATATACGATCA,50,178,217,135,151,143,57,165,128,131
chr1.1_003613850|Alt_0002,chr1.1_003613850,CATGATCAACCACCAAGGAGGCAAACCCTTGATCAGATTGGATCTGGCGTGAACAGTGTTACAATGAGTGACCGTTCTGTA,496,1,946,0,0,1,0,0,319,749
chr1.1_003613850|Ref_0001,chr1.1_003613850,CATGATCAACCACCAAGGAGGCAAACCCTTGATCAGATTGGATCTGGTGTGAACAGTGTTACAATGAGTGACCGTTCTGTA,555,1491,872,1422,1346,1464,1089,812,951,695
chr1.1_003712477|Alt_0002,chr1.1_003712477,TGATTTTAGAGCTTACCACAAATTATAGCATGTGAATAAATTTCACTCATTTCGAATGCACAAACTTTCCTGTAATATCTA,47,43,28,63,49,66,0,49,37,25
chr1.1_003712477|Ref_0001,chr1.1_003712477,TGATTTTAGAGCTTACCACAAATTATAGCATGTGAATAAATTTCACTCATTTTGAATGCACAAACTTTCCTGTAATATCTA,16,27,33,42,39,23,59,9,23,13
chr1.1_003898103|Alt_0002,chr1.1_003898103,GTCCGAAAGAAGAAAAAGTGTCATGTAAAGCTTTGTGATCAATCGTCTTATCCAAATTCTGCACAACCAACAACAGCATAA,35,61,51,67,63,24,126,36,28,46
chr1.1_003898103|Ref_0001,chr1.1_003898103,GTCCGAAAGAAGAAAAAGTGTCATGTAAAGCTTTGTGATCAATTGTCTTATCCAAATTCTGCACAACCAACAACAGCATAA,72,70,38,87,35,101,48,133,56,26
chr1.1_004102347|AltMatch_0001,chr1.1_004102347,GACTTTGCTTCACAAGATTGGTACATACTGTTATATTTCATGAACTTTTTGTTAGAATGTATTCCATTTG,37,22,71,0,80,30,53,0,36,32
chr1.1_004102347|Alt_0002,chr1.1_004102347,GACTTTGCTTCACAAGATTGGTACATACTGTTATATTTCATGAACTTTTTGTTTGAATGTATTCCATTTGTCTCTTGTCAG,0,0,0,0,0,0,0,0,0,0
chr1.1_004102347|RefMatch_0002,chr1.1_004102347,GACTTTGCTTCACAAGATTGGTACATACTGTTATATTTCATGAACTTTCTGCTTGAATGTATTCCATTTG,0,0,0,0,67,0,0,0,0,0
chr1.1_004102347|RefMatch_0001,chr1.1_004102347,GACTTTGCTTCACAAGATTGGTACATACTGTTATATTTCATGAACTTTCTGTTAGAATGTATTCCATTTG,20,0,37,0,1,55,0,0,35,57
chr1.1_004102347|Ref_0001,chr1.1_004102347,GACTTTGCTTCACAAGATTGGTACATACTGTTATATTTCATGAACTTTCTGTTTGAATGTATTCCATTTGTCTCTTGTCAG,19,109,49,195,56,96,81,139,91,79
chr1.1_004315961|Alt_0002,chr1.1_004315961,GATGGAGTATGGAGAAGAAGTTAATTAAGGGCACTTTGGCTTTCCCTTAGAGTTCTTCATGTCCCTATAGCAAGGGCACTC,0,0,0,0,0,0,0,0,0,0