AlleleID,CloneID,AlleleSequence,Sample_1,Sample_2,Sample_3,Sample_4,Sample_5,Sample_6,Sample_7,Sample_8,Sample_9,Sample_10
chr1.1_000194324|AltMatch_0001,chr1.1_000194324,CGAAATAATAACCCAAGTTCTGCCAGTTTATGTTAAAACTTTTTTTACAAGGTACAAGTTCGGTGACAAC,0,139,135,185,90,69,54,54,40,129
chr1.1_000194324|Alt_0002,chr1.1_000194324,CGAAATAATAACCCAAGTTCTGCCAGTTTATGTTAAAACTTTTCTTACAAGGTACAAGTTCGGTGACAACTTAACAAGTAA,44,1,0,59,37,109,41,1,68,0
chr1.1_000194324|Ref_0001,chr1.1_000194324,CGAAATAATAACCCAAGTTCTGCCAGTTTATGTTAAAACTTTTCTTACATGGTACAAGTTCGGTGACAACTTAACAAGTAA,152,171,160,0,71,60,95,147,49,163
chr1.1_000309952|AltMatch_0001,chr1.1_000309952,TGGTATTGTATTAGATGAGATATTCTAACTTGTAAGGTAGAAATCTTGACCACTTATAAACACATATTCA,43,82,63,48,34,5,0,95,0,110
chr1.1_000309952|Alt_0002,chr1.1_000309952,TGGTATTGTATTAGATGAGATATTCTAACTTGTAAGATTGAGATCTTGACCACTTATAAACACATATTCATATCATATGTA,0,0,0,0,0,0,0,0,0,0
chr1.1_000309952|RefMatch_0001,chr1.1_000309952,TGGTATTGTATTAGATGAGATATTCTAACTTGTAAGGTGGAGATCTCGACGACTTATAAACACATATTCA,40,5,11,16,36,12,23,17,20,0
chr1.1_000309952|Ref_0001,chr1.1_000309952,TGGTATTGTATTAGATGAGATATTCTAACTTGTAAGATTGAGATCTCGACCACTTATAAACACATATTCATATCATATGTA,0,0,0,0,0,0,0,0,0,0
chr1.1_000452961|Alt_0002,chr1.1_000452961,TTACGAGATCGCGAAGTTCGTTCCTTTCTTTATCTTTCTTCTCTTTTACCCGACCGGCTCCCTGCAGACCAGAAAGCCCAA,0,0,0,0,0,0,0,0,0,0
chr1.1_000452961|Ref_0001,chr1.1_000452961,TTACGAGATCGCGAAGCTCGTTCCTTTCTTTATCTTTCTTCTCTTTTACCCGACCGGCTCCCTGCAGACCAGAAAGCCCAA,0,0,0,0,0,0,0,0,0,0
chr1.1_000532584|RefMatch_0001,chr1.1_000532584,CAACGGAACATATAAAGATATCCACTTCTCTTGGAGCTTGATAATACTTATAATGTTGGGGATTTGTGTT,0,0,0,157,0,197,0,0,0,0
chr1.1_000532584|RefMatch_0002,chr1.1_000532584,CAACGGAACATATAAAGATATCCACTTCTCTTGGGGCTTGATAATACTTATAATGTTGGGGATTTGTGTT,0,0,0,0,0,0,0,0,143,0
chr1.1_000532584|RefMatch_0003,chr1.1_000532584,CAACGGAACATATAAAGATATCCACTTTTCTCGGAGCTTGATAATACTTATAATGTTGGGGATTTGTGTT,0,0,0,0,0,0,0,0,1,0
chr1.1_000532584|Ref_0001,chr1.1_000532584,CAACGGAACATATAAAGATATCCACTTCTCTTGGAGCTTGATGATACTTATAATGTTGGGGATTTGTGTTTTGCAGGATTT,653,236,176,0,199,410,473,216,177,1
chr1.1_000735393|Alt_0002,chr1.1_000735393,GACTCTTGGAAGGAAAATGGTTTTTCTAGGTAATTAAACTTCAATCAAAGTTACATATTTGACTCACTTCACTATTCTAAA,248,91,74,0,70,0,174,73,165,5
chr1.1_000735393|Ref_0001,chr1.1_000735393,GACTCTTGGAAGGAAAATGGTTTTTCTAGGTAGTTAAACTTCAATCAAAGTTACATATTTGACTCACTTCACTATTCTAAA,76,278,164,188,168,202,53,197,170,225
chr1.1_000837330|Alt_0002,chr1.1_000837330,CCTCTATCTAATAGAGAATATTGATTGGCTGAATGTTGACCATATTCCATGTACCCACTAGGGTTACCCCGTGGAGTCCAA,0,0,0,78,0,90,0,0,176,0
chr1.1_000837330|Ref_0001,chr1.1_000837330,CCTCTATCTAATAGAGAATATTGATTGGCTGAATGTTGACCATATTCCCTGTACCCACTAGGGTTACCCCGTGGAGTCCAA,364,344,348,229,285,265,270,345,147,339
chr1.1_000915014|Alt_0002,chr1.1_000915014,CCAGGCTTCTATATATACAATGATCAGATATGTTAAACCTAAGCTGCTCAGTGCTCCTTAACCCTAAGACACACAGAACCT,1,0,1,0,0,3,1,0,0,0
chr1.1_000915014|Ref_0001,chr1.1_000915014,CCAGGCTTCTATATATACAATGATCAGATATGTTAAACCTAAGCTGCTCGGTGCTCCTTAACCCTAAGACACACAGAACCT,271,465,342,177,486,122,265,377,103,542
chr1.1_001169609|AltMatch_0001,chr1.1_001169609,CAATGATCTCTGCGCAACTGCACCTTTAAAATCTTCCTGCCTACATAGTACTTTTGGTTTTTGGAACCC,304,292,218,149,254,314,247,148,127,0
chr1.1_001169609|Alt_0002,chr1.1_001169609,CAATGATCTCTGCGCAACTGCACCTTTAAAATCTTCCTGCCTGACATAGTACTTTTGGTTTTTGGAACCCAAGTACCGTAT,2,0,0,0,1,0,0,0,1,0
chr1.1_001169609|RefMatch_0002,chr1.1_001169609,CAATGATCTCTGCGCAACTGCACCTTTTAAATCTTCCTGCCTGACAAAGTACTTTTGGTTTTTGGAACCC,0,284,214,564,0,0,0,272,229,243
chr1.1_001169609|Ref_0001,chr1.1_001169609,CAATGATCTCTGCGCAACTGCACCTTTTAAATCTTCCTGCCTGACATAGTACTTTTGGTTTTTGGAACCCAAGTACCGTAT,593,300,196,254,486,571,419,508,451,705
chr1.1_001494903|Alt_0002,chr1.1_001494903,TTGGTGCAGTGTTGATAGTAGCTGGACTATACTTTGTGTTGTGGGGTAAAAGTGAAGAGAAGAAATTATTTGCAAAGGAAC,22,21,9,5,10,5,24,18,7,11
chr1.1_001494903|Ref_0001,chr1.1_001494903,TTGGTGCAGTGTTGATAGTAGCTGGACTATACTTTGTGCTGTGGGGTAAAAGTGAAGAGAAGAAATTATTTGCAAAGGAAC,5,17,7,18,13,14,3,6,22,12
chr1.1_001590881|Alt_0002,chr1.1_001590881,CTGTGAGAAGCACTTCATCTGAATTAAGCAATCCTTTTCCCGTAAGTAAGAGTTTGTAATAGGTATTATCAAACATTCTTG,9,10,5,2,6,6,1,15,6,16
chr1.1_001590881|Ref_0001,chr1.1_001590881,CTGTGAGAAGCACTTCATCTGAATTAAGCAATCCTTTTCCCCTAAGTAAGAGTTTGTAATAGGTATTATCAAACATTCTTG,27,6,12,3,8,9,21,5,11,0
chr1.1_001938036|AltMatch_0003,chr1.1_001938036,CAGTGTTATCAGCCACACATGTAAATTGATGCTTTTATCTGGACTTGTTAAGTATACTGACAGCTTATC,0,0,0,27,0,25,0,0,2,0
chr1.1_001938036|Alt_0002,chr1.1_001938036,CAGTGTTATCAGCCACACATGTAAATTGATGCTTTTCTCTGGACTTGTTTAAGTATACTGACAGCTTATCATGTCTGTTGG,0,48,39,82,30,71,0,0,32,0
chr1.1_001938036|Ref_0001,chr1.1_001938036,CAGTGTTATCAGCCACACATGTAAATTGATTCTTTTCTCTGGACTTGTTTAAGTATACTGACAGCTTATCATGTCTGTTGG,149,101,122,0,98,38,92,178,99,153
chr1.1_002111756|Alt_0002,chr1.1_002111756,GGTAGATAAATTTTACAGATGCTTAAAAGGTTTGCTAAATGGAATTCTGAGTATTGATCCTAAGAAAATCCATGTATAGAT,2,11,5,2,1,4,0,18,11,7
chr1.1_002111756|Ref_0001,chr1.1_002111756,GGTAGATAAATTTTACAGATGCTTAAAAGGTTTGTTAAATGGAATTCTGAGTATTGATCCTAAGAAAATCCATGTATAGAT,115,176,163,149,179,242,136,61,167,56
chr1.1_002341138|Alt_0002,chr1.1_002341138,GACTGTTGGAGTAATTTGCATATCAAAATATCTATATGTGATCACAGGGTTCTTTAAACAGAACATGGAGATTTTGACTTA,0,0,0,10,0,0,0,0,3,0
chr1.1_002341138|Ref_0001,chr1.1_002341138,GACTGTTGGAGTAATTTGCATATCAAAATATCTATATGTGATCACAGGGTACTTTAAACAGAACATGGAGATTTTGACTTA,19,28,27,7,28,12,17,23,6,36
chr1.1_002432574|Alt_0002,chr1.1_002432574,ATACATCCTTCCTATCCTGGATTATCACTGACCAGTTTTCAGGGATGTTTCATCAACAAAATCCTGTCTTATATTACATTC,519,411,331,668,420,405,462,247,216,0
chr1.1_002432574|Ref_0001,chr1.1_002432574,ATACATCCTTCCTATCCTGGATTATCACTGACCACTTTTCAGGGATGTTTCATCAACAAAATCCTGTCTTATATTACATTC,289,332,203,92,268,223,230,368,448,479
chr1.1_002703089|Alt_0002,chr1.1_002703089,CAACCACTTTGCAACCTTGCATGAAACTTTTATTTTCATCTGATATCCTAAACCCACCATTCGCACTGTAGAACCCACAAT,0,202,179,202,81,155,60,124,200,165
chr1.1_002703089|Ref_0001,chr1.1_002703089,CAACCACTTTGCAACCTTGCATGAAACTTTTATCTTCATCTGATATCCTAAACCCACCATTCGCACTGTAGAACCCACAAT,306,172,119,44,177,120,117,167,145,120
chr1.1_002798325|Alt_0002,chr1.1_002798325,TAGAAGTGTATTATATATATCTAACCTAGTATGTTATTTGCATTTGGACAAATTTGTAAAGGCATGGAGAAATTGGAAGGA,0,12,8,0,9,9,8,0,4,8
chr1.1_002798325|Ref_0001,chr1.1_002798325,TAGAAGTGTATTATATATATCTAACCTAGTATTTTATTTGCATTTGGACAAATTTGTAAAGGCATGGAGAAATTGGAAGGA,8,17,10,13,5,8,4,19,5,17
chr1.1_003103125|Alt_0002,chr1.1_003103125,CAGTGATAGCTTATCTCAAGTGATGTAGTTAATTTTTGTTCTCAAACTTTAATAGTAATGGTATTTAAAGTTCTACTTTGA,34,34,62,94,38,26,39,8,0,0
chr1.1_003103125|Ref_0001,chr1.1_003103125,CAGTGATAGCTTATCTCAAGTGATGTAGTTAATTTTTGTTCTCAAACTATAATAGTAATGGTATTTAAAGTTCTACTTTGA,48,79,99,35,80,171,34,162,138,183
chr1.1_003243094|Alt_0002,chr1.1_003243094,AAGGTAAGAACACAACCATTAATGTTATGTTTTTCTGTTTTGTCTTAATGTTTTTATTGATTAGTTACATAATGTCCCATA,9,4,4,16,5,18,8,4,0,0
chr1.1_003243094|Ref_0001,chr1.1_003243094,AAGGTAAGAACACAACCATTAATGTTATGTTATTCTGTTTTGTCTTAATGTTTTTATTGATTAGTTACATAATGTCCCATA,8,12,12,0,10,11,7,17,16,17
chr1.1_003329439|Alt_0002,chr1.1_003329439,GAACTAAGACCAACGTTTAAATACTAAGTTTATACTAATTAGGGTTTATTTTCTGGTTTGTAACACTGCATGTAAAAGTTA,1,1,0,0,3,6,1,5,5,8
chr1.1_003329439|Ref_0001,chr1.1_003329439,GAACTAAGACCAACGTTTAAATACTAAGTTTATCCTAATTAGGGTTTATTTTCTGGTTTGTAACACTGCATGTAAAAGTTA,14,18,18,10,14,10,7,14,0,2
chr1.1_003491884|Alt_0002,chr1.1_003491884,GAGGAAATCGACACTTTAGTTGATTATCTCATTAGCCGTGGTTTTGGCAAGAACTAATTATTAAGAGGTGATATACGATCA,0,138,95,0,167,37,71,0,209,63
chr1.1_003491884|RefMatch_0002,chr1.1_003491884,GAGGAAATCGACACTTTAGTTGATTATCTCCTTAGCCATGGTTTTGGCAAGAACTAATTATTAAGAGGTG,0,0,0,0,0,0,0,1,0,0
chr1.1_003491884|Ref_0001,chr1.1_003491884,GAGGAAATCGACACTTTAGTTGATTATCTCCTTAGCCGTGGTTTTGGCAAGAACTAATTATTAAGAGGTGATATACGATCA,219,142,116,201,0,169,88,311,66,161
chr1.1_003613850|Alt_0002,chr1.1_003613850,CATGATCAACCACCAAGGAGGCAAACCCTTGATCAGATTGGATCTGGCGTGAACAGTGTTACAATGAGTGACCGTTCTGTA,2,0,0,636,0,0,0,2,330,0
chr1.1_003613850|Ref_0001,chr1.1_003613850,CATGATCAACCACCAAGGAGGCAAACCCTTGATCAGATTGGATCTGGTGTGAACAGTGTTACAATGAGTGACCGTTCTGTA,1646,1541,992,593,1244,1149,1359,1970,846,1120