# Generated by roxygen2: do not edit by hand

S3method(diagnostic.cor.eigs,Seurat)
S3method(diagnostic.cor.eigs,default)
export(AddAdj)
export(AddParSettingFAST)
export(FAST)
export(FAST_run)
export(FAST_single)
export(FAST_structure)
export(IntegrateSRTData)
export(NCFM)
export(NCFM_fast)
export(RunHarmonyLouvain)
export(RuniSCMEB)
export(SelectHKgenes)
export(coembed_plot)
export(coembedding_umap)
export(diagnostic.cor.eigs)
export(find.signature.genes)
export(get.top.signature.dat)
export(get_r2_mcfadden)
export(iscmeb_run)
export(model_set_FAST)
export(pdistance)
export(transferGeneNames)
import(ggplot2)
import(gtools)
importFrom(DR.SC,FindSVGs)
importFrom(DR.SC,getAdj_auto)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(PRECAST,Add_embed)
importFrom(PRECAST,getAdj_fixedNumber)
importFrom(PRECAST,getAdj_reg)
importFrom(Rcpp,evalCpp)
importFrom(Seurat,CreateAssayObject)
importFrom(Seurat,CreateDimReducObject)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,Embeddings)
importFrom(Seurat,FindClusters)
importFrom(Seurat,FindNeighbors)
importFrom(Seurat,FindVariableFeatures)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,Idents)
importFrom(Seurat,Loadings)
importFrom(Seurat,SetAssayData)
importFrom(Seurat,`DefaultAssay<-`)
importFrom(Seurat,`Idents<-`)
importFrom(furrr,future_map)
importFrom(future,plan)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_x_reverse)
importFrom(ggplot2,scale_y_reverse)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(harmony,HarmonyMatrix)
importFrom(irlba,irlba)
importFrom(mclust,Mclust)
importFrom(mclust,mclustBIC)
importFrom(methods,as)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(parallel,clusterExport)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,parLapply)
importFrom(parallel,stopCluster)
importFrom(pbapply,pblapply)
importFrom(stats,as.formula)
importFrom(stats,coef)
importFrom(stats,cov)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,model.matrix.lm)
importFrom(stats,residuals)
importFrom(stats,rnorm)
importFrom(stats,var)
importFrom(utils,data)
importFrom(utils,head)
useDynLib(ProFAST, .registration = TRUE)
