$,enve.GrowthCurve-method
                        Attribute accessor
$,enve.RecPlot2-method
                        Attribute accessor
$,enve.RecPlot2.Peak-method
                        Attribute accessor
enve.GrowthCurve-class
                        Enveomics: Growth Curve S4 Class
enve.RecPlot2-class     Enveomics: Recruitment Plot (2) - S4 Class
enve.RecPlot2.Peak-class
                        Enveomics: Recruitment Plot (2) Peak - S4 Class
enve.TRIBS-class        Enveomics: TRIBS S4 Class
enve.TRIBS.merge        Enveomics: TRIBS Merge
enve.TRIBStest-class    Enveomics: TRIBS Test S4 Class
enve.__prune.iter       Enveomics: Prune Iter (Internal Function)
enve.__prune.reduce     Enveomics: Prune Reduce (Internal Function)
enve.__tribs            Enveomics: TRIBS - Internal Ancillary Function
enve.barplot            Enveomics: Barplot
enve.cliopts            Enveomics: Cliopts
enve.col.alpha          Enveomics: Color Alpha
enve.col2alpha          Enveomics: Color to Alpha (deprecated)
enve.df2dist            Enveomics: Data Frame to Dist
enve.df2dist.group      Enveomics: Data Frame to Dist (Group)
enve.df2dist.list       Enveomics: Data Frame to Dist (List)
enve.growthcurve        Enveomics: Growth Curve
enve.prefscore          Enveomics: Pref Score
enve.prune.dist         Enveomics: Prune Dist
enve.recplot            Enveomics: Recruitment Plots
enve.recplot2           Enveomics: Recruitment Plot (2)
enve.recplot2.ANIr      Enveomics: Recruitment Plot (2) ANI Estimate
enve.recplot2.__counts
                        Enveomics: Recruitment Plot (2) Internal
                        Ancillary Function
enve.recplot2.__peakHist
                        Enveomics: Recruitment Plot (2) Peak S4 Class -
                        Internal Ancillary Function
enve.recplot2.__whichClosestPeak
                        Enveomics: Recruitment Plot (2) Peak Finder -
                        Internal Ancillary Function
enve.recplot2.changeCutoff
                        Enveomics: Recruitment Plot (2) Change Cutoff
enve.recplot2.compareIdentities
                        Enveomics: Recruitment Plot (2) Compare
                        Identities
enve.recplot2.coordinates
                        Enveomics: Recruitment Plot (2) Coordinates
enve.recplot2.corePeak
                        Enveomics: Recruitment Plot (2) Core Peak
                        Finder
enve.recplot2.extractWindows
                        Enveomics: Recruitment Plot (2) Extract Windows
enve.recplot2.findPeaks
                        Enveomics: Recruitment Plot (2) Peak Finder
enve.recplot2.findPeaks.__em_e
                        Enveomics: Recruitment Plot (2) EM Peak Finder
                        - Internal Ancillary Function Expectation
enve.recplot2.findPeaks.__em_m
                        Enveomics: Recruitment Plot (2) Em Peak Finder
                        - Internal Ancillary Function Maximization
enve.recplot2.findPeaks.__emauto_one
                        Enveomics: Recruitment Plot (2) EMauto Peak
                        Finder - Internal Ancillary Function
enve.recplot2.findPeaks.__mow_one
                        Enveomics: Recruitment Plot (2) Mowing Peak
                        Finder - Internal Ancillary Function 1
enve.recplot2.findPeaks.__mower
                        Enveomics: Recruitment Plot (2) Mowing Peak
                        Finder - Internal Ancillary Function 2
enve.recplot2.findPeaks.em
                        Enveomics: Recruitment Plot (2) Em Peak Finder
enve.recplot2.findPeaks.emauto
                        Enveomics: Recruitment Plot (2) Emauto Peak
                        Finder
enve.recplot2.findPeaks.mower
                        Enveomics: Recruitment Plot (2) Mowing Peak
                        Finder
enve.recplot2.seqdepth
                        Enveomics: Recruitment Plot (2) Sequencing
                        Depth
enve.recplot2.windowDepthThreshold
                        Enveomics: Recruitment Plot (2) Window Depth
                        Threshold
enve.selvector          Enveomics: Selection vector
enve.tribs              Enveomics: TRIBS
enve.tribs.test         Enveomics: TRIBS Test
enve.truncate           Enveomics: Truncate
growth.curves           Bacterial growth curves for three Escherichia
                        coli mutants
phyla.counts            Counts of microbial phyla in four sites
plot.enve.GrowthCurve   Enveomics: Plot of Growth Curve
plot.enve.RecPlot2      Enveomics: Recruitment Plot (2)
plot.enve.TRIBS         Enveomics: TRIBS Plot
plot.enve.TRIBStest     Enveomics: TRIBS Plot Test
summary.enve.GrowthCurve
                        Enveomics: Summary of Growth Curve
summary.enve.TRIBS      Enveomics: TRIBS Summary
summary.enve.TRIBStest
                        Enveomics: TRIBS Summary Test
