R: Analysing 'SNP' Data to Support Captive Breeding

# Analysing 'SNP' Data to Support Captive Breeding

## Documentation for package ‘dartR.captive’ version 1.0.2

- DESCRIPTION file.

## Help Pages

gl.assign.grm | Population assignment using grm
gl.assign.mahalanobis | Assign an individual of unknown provenance to population based on Mahalanobis Distance
gl.assign.pa | Eliminates populations as possible source populations for an individual of unknown provenance, using private alleles
gl.assign.pca | Assign an individual of unknown provenance to population based on PCA
gl.filter.parent.offspring | Filters putative parent offspring within a population
gl.grm | Calculates an identity by descent matrix
gl.grm.network | Represents a genomic relationship matrix (GRM) as a network
gl.plot.network | Represents a distance or dissimilarity matrix as a network
gl.report.parent.offspring | Identifies putative parent offspring within a population
gl.run.EMIBD9 | Run program EMIBD9
gl.sim.relatedness | Simulate relatedness estimates.
utils.assignment | Population assignment probabilities
utils.assignment_2 | Population assignment probabilities
utils.assignment_3 | Population assignment probabilities
utils.assignment_4 | Population assignment probabilities