Package: countToFPKM
Title: Convert Counts to Fragments per Kilobase of Transcript per
        Million (FPKM)
Version: 1.0
Date: 2019-03-22
Authors@R: c(person("Ahmed", "Alhendi", email = "asna4@le.ac.uk",role = c("aut","cre")))
Author: Ahmed Alhendi [aut, cre]
Maintainer: Ahmed Alhendi <asna4@le.ac.uk>
Depends: R (>= 3.1.0), ComplexHeatmap, circlize, stats
Description: Implements the algorithm described in Trapnell,C. et al. (2010) <doi: 10.1038/nbt.1621>. This function takes read counts matrix of RNA-Seq data, feature lengths which can be retrieved using 'biomaRt' package, and the mean fragment lengths which can be calculated using the 'CollectInsertSizeMetrics(Picard)' tool. It then returns a matrix of FPKM normalised data by library size and feature effective length. It also provides the user with a quick and reliable function to generate FPKM heatmap plot of the highly variable features in RNA-Seq dataset.
License: GPL-3
URL: https://github.com/AAlhendi1707/countToFPKM
BugReports: https://github.com/AAlhendi1707/countToFPKM/issues
NeedsCompilation: no
Packaged: 2019-04-07 16:59:02 UTC; asna4
Repository: CRAN
Date/Publication: 2019-04-07 17:42:43 UTC
Built: R 4.3.3; ; 2025-01-24 15:20:52 UTC; unix
