Package: coreCollection
Type: Package
Title: Core Collection
Version: 0.9.5
Authors@R: 
  c(person(given = "Matthijs",
           family = "Brouwer",
           role = c("aut", "cre"),
           email = "matthijs.brouwer@wur.nl",
           comment = c(ORCID = "0000-0001-8183-0484")),
    person(given = "Reinhoud",
           family = "Blok, de",
           email = "reinhoud.deblok@wur.nl",
           role = "ctb"))
Description: 
  Create a custom sized Core Collection based on a distance matrix and applying
  the A-NE (accession nearest entry), E-NE (entry nearest entry) or E-E (entry entry) method
  as introduced in Jansen and van Hintum (2007) <doi:10.1007/s00122-006-0433-9> and
  further elaborated on in Odong, T.L. (2012) <https://edepot.wur.nl/212422>.
  Optionally a list of preselected accessions to be included into the core can be set.
  For each accession in the computed core, if available nearby accessions are retrievable
  that can be used as an alternative.
License: GPL (>= 2)
Encoding: UTF-8
Depends: R (>= 3.5)
LinkingTo: Rcpp
Imports: Rcpp (>= 1.0.0), R6 (>= 2.4.0), methods
Collate: coreCollection.package.R coreCollection.R coreSelection.R
        RcppExports.R
Suggests: testthat (>= 3.0.0), vcfR, adegenet, ggfortify
RoxygenNote: 7.2.2
NeedsCompilation: yes
Packaged: 2022-12-20 08:37:25 UTC; matthijs
Author: Matthijs Brouwer [aut, cre] (<https://orcid.org/0000-0001-8183-0484>),
  Reinhoud Blok, de [ctb]
Maintainer: Matthijs Brouwer <matthijs.brouwer@wur.nl>
Config/testthat/edition: 3
Repository: CRAN
Date/Publication: 2022-12-20 13:00:02 UTC
Built: R 4.3.3; aarch64-apple-darwin20; 2025-01-24 06:01:20 UTC; unix
Archs: coreCollection.so.dSYM
