R: Validation of Clustering Results

# Validation of Clustering Results

## Documentation for package ‘clValid’ version 0.7

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

AD | Stability Measures
ADM | Stability Measures
annotationListToMatrix | Change annotation list to matrix
APN | Stability Measures
BHI | Biological Homogeneity Index
BSI | Biological Stability Index
clusterMethods | Class "clValid"
clusterMethods-method | Class "clValid"
clusters | Class "clValid"
clusters-method | Class "clValid"
clValid | Validate Cluster Results
clValid-class | Class "clValid"
clValidObj | Class "clValid"
connectivity | Connectivity Measure
dunn | Dunn Index
FOM | Stability Measures
getRanksWeights | Extract ranks and weights from clValid object
measNames | Class "clValid"
measNames-method | Class "clValid"
measures | Class "clValid"
measures-method | Class "clValid"
mouse | Mouse Mesenchymal Cells
nClusters | Class "clValid"
nClusters-method | Class "clValid"
optimalScores | Class "clValid"
optimalScores-method | Class "clValid"
plot-method | Class "clValid"
plot.sota | Plot Function for a SOTA Object
print-method | Class "clValid"
print.sota | Print Function for a SOTA Object
readAnnotationFile | Read in biological annotation files from external file
show-method | Class "clValid"
sota | Self-organizing Tree Algorithm (SOTA)
stability | Stability Measures
summary-method | Class "clValid"