Package: aSPU
Version: 1.50
Date: 2021-6-28
Title: Adaptive Sum of Powered Score Test
Description: R codes for the (adaptive) Sum of Powered Score ('SPU' and 'aSPU')
    tests, inverse variance weighted Sum of Powered score ('SPUw' and 'aSPUw') tests
    and gene-based and some pathway based association tests (Pathway based Sum of
    Powered Score tests ('SPUpath'), adaptive 'SPUpath' ('aSPUpath') test, 'GEEaSPU'
    test for multiple traits - single 'SNP' (single nucleotide polymorphism)
    association in generalized estimation equations, 'MTaSPUs' test for multiple
    traits - single 'SNP' association with Genome Wide Association Studies ('GWAS')
    summary statistics, Gene-based Association Test that uses an extended 'Simes'
    procedure ('GATES'), Hybrid Set-based Test ('HYST') and extended version
    of 'GATES' test for pathway-based association testing ('GATES-Simes'). ).
    The tests can be used with genetic and other data sets with covariates. The
    response variable is binary or quantitative. Summary; (1) Single trait-'SNP' set
    association with individual-level data ('aSPU', 'aSPUw', 'aSPUr'), (2) Single trait-'SNP'
    set association with summary statistics ('aSPUs'), (3) Single trait-pathway
    association with individual-level data ('aSPUpath'), (4) Single trait-pathway
    association with summary statistics ('aSPUsPath'), (5) Multiple traits-single
    'SNP' association with individual-level data ('GEEaSPU'), (6) Multiple traits-
    single 'SNP' association with summary statistics ('MTaSPUs'), (7) Multiple traits-'SNP' set association with summary statistics('MTaSPUsSet'), (8) Multiple traits-pathway association with summary statistics('MTaSPUsSetPath').
Author: Il-Youp Kwak and others (See Author(s) in each function manual)
Maintainer: Il-Youp Kwak <ikwak2@cau.ac.kr>
VignetteBuilder: knitr
Suggests: rmarkdown, markdown, knitr
Depends: R(>= 3.6.0), gee, MASS, mvtnorm, fields, matrixStats
License: GPL-3
URL: https://github.com/ikwak2/aSPU
RoxygenNote: 7.1.0
NeedsCompilation: no
Packaged: 2021-06-28 16:32:54 UTC; root
Repository: CRAN
Date/Publication: 2021-06-28 17:10:02 UTC
Built: R 4.3.3; ; 2025-01-24 14:33:23 UTC; unix
