R: Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter

# Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter

## Documentation for package ‘DoubleExpSeq’ version 1.1

- DESCRIPTION file.

## Help Pages

DoubleExpSeq-package | DoubleExpSeq is a package with application to RNA-Seq experiments that tests for differential exon usage.
counts | Exon Inclusion Counts
DB.MAPlot | Plots Log-Fold Change versus Log-Concentration for Inclusion/Exclusion Data
DBGLM1 | Double Binomial Generalized Linear Model with Shrinkage of the Dispersion Parameter
DoubleExpSeq | DoubleExpSeq is a package with application to RNA-Seq experiments that tests for differential exon usage.
EstimateDEBDisp | DEB-Seq: Empirical Bayes Estimates of Dispersion for a Double Binomial Distribution
EstimateWEBDisp | WEB-Seq: Weighted Likelihood Empirical Bayes Estimates of Dispersion for a Double Binomial Distribution
exon | Toy Exon Inclusion and Total Counts Used for Examples
groups | Group Structure of the Toy Data Set
offsets | Exon Total Counts
optimPlot | Plot the WEB-Seq Maximum Likelihood Solution for the Weight Parameter in the Weighted Likelihood