Package: DiscreteQvalue
Title: Improved q-Values for Discrete Uniform and Homogeneous Tests
Version: 1.1
Authors@R: c(
  person("Marta", "Cousido Rocha", email = "martacousido@uvigo.es", role = c("aut", "cre")),
  person("José Carlos", "Soage González", email = "jsoage@uvigo.es", role = "ctr"),
  person("Jacobo", "de Uña Álvarez", email = "jacobo@uvigo.es", role = c("aut", "ths")),
  person("Sebastian", "Döhler", role = "aut"))
Maintainer: Marta Cousido Rocha <martacousido@uvigo.es>
Description: We consider a multiple testing procedure used in many modern applications which is the q-value method proposed by Storey and Tibshirani (2003), <doi:10.1073/pnas.1530509100>. The q-value method is based on the false discovery rate (FDR), hence versions of the q-value method can be defined depending on which estimator of the proportion of true null hypotheses, p0, is plugged in the FDR estimator. We implement the q-value method based on two classical pi0 estimators, and furthermore, we propose and implement three versions of the q-value method for homogeneous discrete uniform P-values based on pi0 estimators which take into account the discrete distribution of the P-values.
License: GPL-2
Suggests: coin, exactRankTests
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
NeedsCompilation: no
Packaged: 2020-04-01 15:54:56 UTC; sidor
Author: Marta Cousido Rocha [aut, cre],
  José Carlos Soage González [ctr],
  Jacobo de Uña Álvarez [aut, ths],
  Sebastian Döhler [aut]
Repository: CRAN
Date/Publication: 2020-04-01 17:10:03 UTC
Built: R 4.3.3; ; 2025-01-24 06:39:45 UTC; unix
