R: Analysis of RNA Cytosine-5 Methylation

# Analysis of RNA Cytosine-5 Methylation

## Documentation for package ‘BisRNA’ version 0.2.2

- DESCRIPTION file.

## Help Pages

BisRNA-package | Analysis of RNA Cytosine-5 Methylation from bisulfite sequencing experiments
Bisdata | Three synthetic samples of RNA bisulfite sequencing for examples and tests
Bisdata1 | Synthetic sample 1 of RNA bisulfite sequencing
Bisdata2 | Synthetic sample 2 of RNA bisulfite sequencing
Bisdata3 | Synthetic sample 3 of RNA bisulfite sequencing
BisRNA | Analysis of RNA Cytosine-5 Methylation from bisulfite sequencing experiments
class.BisXP | Cast bisulfite experiment data into a BisXP object
fisher.method | Function implementing Fisher's method to combine independent p-values
intersectMatrix | Take intersection of 2 tables
read.BisXP | Read RNA bisulfite experiment data and cast it into a BisXP object
RNAmeth.poisson.par | Find ratio (Poisson parameter / coverage) for one sample of bisulfite-converted RNA
RNAmeth.poisson.test | Test RNA Cytosine methylation based on Poisson model distribution
samples.combine | Combine samples p-values and ratios
testMeth | Apply poisson.test to BS coverage and non-conversion ratio.