R: Effective Reproduction Number Estimation

# Effective Reproduction Number Estimation

## Documentation for package ‘ern’ version 2.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

agg_to_daily | Infer daily counts from aggregates
cl.data | Sample of aggregated clinical reports
def_dist | Define a family of distributions.
estimate_R_cl | Estimate the effective reproduction from clinical report data
estimate_R_ww | Estimate the effective reproduction from wastewater concentration data.
extract_mcmc_values | Extract MCMC chains from a JAGS object
get_discrete_dist | Get a discretized, truncated version of a distribution
linear_int_daily | Daily incidence from linear interpolation
plot_diagnostic_cl | Diagnostic plot for R estimation from clinical report data
plot_diagnostic_ww | Diagnostic plot for R estimation from wastewater data
plot_dist | Plot a distribution
plot_gelman_rubin | Plot the Gelman Rubin statistic for all parameters.
plot_traces | Plot MCMC traces
ww.data | Sample of wastewater concentration