R: Epidemic/Network-Related Tools

# Epidemic/Network-Related Tools

## Documentation for package ‘epinet’ version 2.1.11

- DESCRIPTION file.

## Help Pages

BuildX | Build a dyadic covariate matrix (X)
epi2newick | Prints a transmission tree in Newick format.
epi2newickmcmc | Prints a transmission tree in Newick format.
epibayesmcmc | Uses epidemic data to perform Bayesian inference on a contact network
epinet | Uses epidemic data to perform Bayesian inference on a contact network
ess | Calculate the Effective Sample Size
HagellochDyadCov | Hagelloch measles data.
HagellochTimes | Hagelloch measles data.
MCMCcontrol | Set control parameters for epinet MCMC algorithm
plot.epidemic | Plot the spread of an epidemic
plot.epinet | Plot the spread of an epidemic
print.epidemic | Prints an epidemict object
print.epinet | Print basic information about an epinet object
priorcontrol | Set prior distributions and hyperparameters for epinet MCMC algorithm
SEIR.simulator | Simulate an epidemic on a contact network
SimulateDyadicLinearERGM | Simulates an ERGM network using given covariate values
summary.epidemic | Summarize simulated epidemic
summary.epinet | Summarize posterior samples from epinet object
write.epinet | Writes posterior samples from an epinet object to an output file