ChangeSSM               Generate set of parameters for different forms
                        of thermal norm of reaction
DatabaseNestingArea     Database of RMU for marine turtles
DatabaseTSD             Database of TSD information for reptiles
DatabaseTSD.version     Version of database of TSD information for
                        reptiles
FormatNests             Create a dataset of class Nests to be used with
                        searchR
GRTRN_MHmcmc            Metropolis-Hastings algorithm for Embryo Growth
                        Rate Thermal Reaction Norm
GenerateAnchor          Generate a set of anchored parameters
GenerateConstInc        Generate a data.frame with constant incubation
                        temperature and incubation duration
Generate_hatchling_metric
                        Generate a data.frame that can be used as
                        hatchling.metric value for searchR()
HatchingSuccess.MHmcmc
                        Metropolis-Hastings algorithm for hatching
                        success
HatchingSuccess.MHmcmc_p
                        Generates set of parameters to be used with
                        HatchingSuccess.MHmcmc()
HatchingSuccess.fit     Fit a hatching success model to data using
                        maximum likelihood
HatchingSuccess.lnL     Return -log likelihood of the data and the
                        parameters
HatchingSuccess.model   Return the hatching success according the set
                        of parameters and temperatures
MovingIncubation        Simulate incubation of a nest with the
                        beginning of incubation varying
P_TRT                   Estimate the transitional range of temperatures
                        based on a set of parameters
STRN                    Estimate the parameters that best describe the
                        sexualisation thermal reaction norm within the
                        TSP
STRN_MHmcmc             Metropolis-Hastings algorithm for Sexualisation
                        Thermal Reaction Norm
TRN_MHmcmc_p            Generates set of parameters to be used with
                        GRTRN_MHmcmc() or STRN_MHmcmc()
TSP.list                Database of thermosensitive period of
                        development for sex determination
calibrate.datalogger    Calibrate data loggers and correct time series
                        of temperatures
dydt.Gompertz           Return the derivative of the Gompertz function
dydt.exponential        Return the derivative of the exponential
                        function
dydt.linear             Return the derivative of the linear function
embryogrowth-package    The package embryogrowth
hist.Nests              Show the histogram of temperatures with set of
                        nests
hist.NestsResult        Show the histogram of temperatures with set of
                        nests
info.nests              Calculte statistics about nests
integral.Gompertz       Return the result of the Gompertz function
integral.exponential    Return the derivative of the exponential
                        function
integral.linear         Return the linear function
likelihoodR             Estimate the likelihood of a set of parameters
                        for nest incubation data
logLik.HatchingSuccess
                        Return -log L of a fit
logLik.NestsResult      Return Log Likelihood of a fit generated by
                        searchR
logLik.STRN             Return Log Likelihood of a fit generated by
                        STRN
logLik.tsd              Return Log Likelihood of a fit generated by tsd
movement                Analyze movement recorded within a nest with an
                        accelerometer datalogger
nest                    Timeseries of temperatures for nests
nobs.HatchingSuccess    Return number of observations of a fit
nobs.NestsResult        Return number of observations of a fit
plot.HatchingSuccess    Plot results of HatchingSuccess.fit() that best
                        describe hatching success
plot.NestsResult        Plot the embryo growth
plot.tsd                Plot results of tsd() that best describe
                        temperature-dependent sex determination
plotR                   Plot the fitted growth rate dependent on
                        temperature and its density
plot_transition         Show fonction used for transition
predict.HatchingSuccess
                        Return prediction based on a model fitted with
                        HatchingSuccess.fit()
predict.tsd             Estimate sex ratio according to constant
                        incubation temperature
resultNest_3p_Dallwitz
                        Fit using the nest database
resultNest_3p_Weibull   Result of the fit using the nest database using
                        Weibull function
resultNest_4p_SSM       Fit using the nest database
resultNest_4p_SSM_Linear
                        Fit using the nest database
resultNest_4p_normal    Result of the fit using the nest database using
                        asymmetric normal function
resultNest_4p_transition
                        Result of the fit using the nest database using
                        transition
resultNest_4p_trigo     Result of the fit using the nest database using
                        trigonometric function
resultNest_4p_weight    Fit using the nest database with weight
resultNest_5p_Dallwitz
                        Fit using the nest database
resultNest_6p_SSM       Fit using the nest database
resultNest_mcmc_4p_SSM
                        Result of the mcmc using the nest database
resultNest_mcmc_4p_SSM_Linear
                        Result of the mcmc using the nest database
resultNest_mcmc_6p_SSM
                        Result of the mcmc using the nest database
resultNest_mcmc_newp    Result of the mcmc using the nest database with
                        anchored parameters
resultNest_newp         Fit using the nest database with anchored
                        parameters
searchR                 Fit the parameters that best represent nest
                        incubation data.
stages                  Database of of embryonic development and
                        thermosensitive period of development for sex
                        determination
summary.Nests           Summarize the information from a Nests object.
switch.transition       Add a transition parameter on a set of
                        parameters or remove it
tempConst               Timeseries of constant temperatures for nests
test.parallel           Estimate the likelihood of a set of parameters
                        for nest incubation data with or without
                        parallel computing option
tsd                     Estimate the parameters that best describe
                        temperature-dependent sex determination
tsd_MHmcmc              Metropolis-Hastings algorithm for Sex ratio
tsd_MHmcmc_p            Generates set of parameters to be used with
                        tsd_MHmcmc()
uncertainty.datalogger
                        Uncertainty of average temperatures obtained
                        using temperature data logger
web.tsd                 Run a shiny application for basic functions of
                        tsd function
weightmaxentropy        Search for the weights of the nests which
                        maximize the entropy of nest temperatures
                        distribution
