Package: edlibR
Title: R Integration for Edlib, the C/C++ Library for Exact Pairwise
        Sequence Alignment using Edit (Levenshtein) Distance
Version: 1.0.2
Authors@R: c(person("Martin", "Šošić", email = "sosic.martin@gmail.com", role = c("aut")), person("Evan", "Biederstedt", email="evan.biederstedt@gmail.com", role=c("aut", "cre")))
Description: Bindings to edlib, a lightweight performant C/C++ library for exact pairwise sequence alignment using edit distance (Levenshtein distance). The algorithm computes the optimal alignment path, but also can be used to find only the start and/or end of the alignment path for convenience. Edlib was designed to be ultrafast and require little memory, with the capability to handle very large sequences. Three alignment methods are supported: global (Needleman-Wunsch), infix (Hybrid Wunsch), and prefix (Semi-Hybrid Wunsch). The original C/C++ library is described in "Edlib: a C/C++ library for fast, exact sequence alignment using edit distance", M. Šošić, M. Šikić, <doi:10.1093/bioinformatics/btw753>.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 3.5.0)
Imports: Rcpp (>= 1.0.5), stringr (>= 1.4.0)
Suggests: testthat (>= 3.1.0), rmarkdown, knitr
RoxygenNote: 7.1.2
VignetteBuilder: knitr
URL: https://github.com/evanbiederstedt/edlibR
BugReports: https://github.com/evanbiederstedt/edlibR/issues
NeedsCompilation: yes
LinkingTo: Rcpp
Author: Martin Šošić [aut],
  Evan Biederstedt [aut, cre]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Packaged: 2024-02-22 23:58:53 UTC; evanbiederstedt
Repository: CRAN
Date/Publication: 2024-02-23 00:10:02 UTC
Built: R 4.2.3; aarch64-apple-darwin20; 2024-02-23 02:29:50 UTC; unix
Archs: edlibR.so.dSYM
