dowser-package	dowser-package
airrClone	airrClone-class
airrClone-class	airrClone-class
BiopsyTrees	BiopsyTrees
bootstrapTrees	bootstrapTrees
buildClonalGermline	buildClonalGermline
buildGermline	buildGermline
buildIgphyml	buildIgphyml
buildPhylo	buildPhylo
buildPML	buildPML
buildPratchet	buildPratchet
buildRAxML	buildRAxML
calcRF	calcRF
collapseNodes	collapseNodes
colorTrees	colorTrees
condenseTrees	condenseTrees
correlationTest	correlationTest
createGermlines	createGermlines
downsampleClone	downsampleClone
dowser	dowser
ExampleAirr	ExampleAirr
ExampleClones	ExampleClones
ExampleDbChangeo	ExampleDbChangeo
ExampleMixedClones	ExampleMixedClones
ExampleMixedDb	ExampleMixedDb
findSwitches	findSwitches
formatClones	formatClones
getBootstraps	getBootstraps
getDivergence	getDivergence
getGermline	getGermline
getNodeSeq	getNodeSeq
getPalette	getPalette
getSeq	getSeq
getSubclones	getSubclones
getSubTaxa	getSubTaxa
getTrees	getTrees
IsotypeTrees	IsotypeTrees
makeAirrClone	makeAirrClone
makeModelFile	makeModelFile
maskCodons	maskCodons
maskSequences	maskSequences
plotTrees	plotTrees
readFasta	readFasta
readIMGT	readIMGT
readLineages	readLineages
readModelFile	readModelFile
reconIgPhyML	reconIgPhyML
rerootTree	rerootTree
resolveLightChains	resolveLightChains
resolvePolytomies	resolvePolytomies
runCorrelationTest	runCorrelationTest
scaleBranches	scaleBranches
stitchRegions	stitchRegions
stitchVDJ	stitchVDJ
testPS	testPS
testSC	testSC
testSP	testSP
TimeTrees	TimeTrees
treesToPDF	treesToPDF
writeLineageFile	writeLineageFile
