


## cophescan 1.4.0

-   Set default values for fixed priors (pa and pc) in cophe.single and cophe.susie
-   Updated diagnostics of mcmc chains in vignettes
-   Fixed prior information added in vignette
-   Submitted to CRAN

## cophescan 1.3.2

-   Changed one instance of print() to message()

## cophescan 1.3.1

-   Changed plotting functions where querytrait and query_trait_names are now required arguments instead of optional in `prepare_plot_data`, `get_beta`, `cophe_plot`, `cophe_heatmap`.
-   reset global user parameters after running vignettes.
-   Updated vignettes

## cophescan 1.3.0

-   Fixed minor note from CRAN auto-check of 1.2.0

## cophescan 1.2.0

-   re-attempted CRAN submission but persistent note regarding access to internal functions

## cophescan 1.1.0

-   1.1.0 CRAN re-submission
-   Fixed warnings from CRAN auto-check of 1.0.0
-   RcppArmadillo only in LinkingTo and removed from imports
-   Updated vignettes

## cophescan 1.0.0

-   Passed local R CMD checks and tested on R 4.3.1
-   Prepared package for CRAN submission

## cophescan 0.1.0

-   Github version
-   Added a `NEWS.md` file to track changes to the package.

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