HPDinterval             Highest Posterior Density intervals
[.mcmc                  Extract or replace parts of MCMC objects
as.matrix.mcmc          Conversions of MCMC objects
as.ts.mcmc              Coerce mcmc object to time series
autocorr                Autocorrelation function for Markov chains
autocorr.diag           Autocorrelation function for Markov chains
autocorr.plot           Plot autocorrelations for Markov Chains
batchSE                 Batch Standard Error
bugs2jags               Convert WinBUGS data file to JAGS data file
coda.options            Options settings for the codamenu driver
codamenu                Main menu driver for the coda package
crosscorr               Cross correlations for MCMC output
crosscorr.plot          Plot image of correlation matrix
cumuplot                Cumulative quantile plot
densityplot.mcmc        Trellis plots for mcmc objects
densplot                Probability density function estimate from MCMC
                        output
effectiveSize           Effective sample size for estimating the mean
gelman.diag             Gelman and Rubin's convergence diagnostic
gelman.plot             Gelman-Rubin-Brooks plot
geweke.diag             Geweke's convergence diagnostic
geweke.plot             Geweke-Brooks plot
heidel.diag             Heidelberger and Welch's convergence diagnostic
line                    Simple linear regression example
mcmc                    Markov Chain Monte Carlo Objects
mcmc.list               Replicated Markov Chain Monte Carlo Objects
mcmcUpgrade             Upgrade mcmc objects in obsolete format
mcpar                   Mcpar attribute of MCMC objects
multi.menu              Choose multiple options from a menu
nchain                  Dimensions of MCMC objects
pcramer                 The Cramer-von Mises Distribution
plot.mcmc               Summary plots of mcmc objects
raftery.diag            Raftery and Lewis's diagnostic
read.and.check          Read data interactively and check that it
                        satisfies conditions
read.coda               Read output files in CODA format
read.coda.interactive   Read CODA output files interactively
read.openbugs           Read CODA output files produced by OpenBUGS
rejectionRate           Rejection Rate for Metropolis-Hastings chains
spectrum0               Estimate spectral density at zero
spectrum0.ar            Estimate spectral density at zero
summary.mcmc            Summary statistics for Markov Chain Monte Carlo
                        chains
thin                    Thinning interval
time.mcmc               Time attributes for mcmc objects
traceplot               Trace plot of MCMC output
varnames                Named dimensions of MCMC objects
window.mcmc             Time windows for mcmc objects
