R: Co-Correspondence Analysis Methods

# Co-Correspondence Analysis Methods

## Documentation for package ‘cocorresp’ version 0.4-4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

cocorresp-package | Co-correspondence analysis ordination methods for community ecology
beetles | Carabid beetles and vascular plants in Dutch roadside verges
biplot.predcoca | Biplots of co-correspondence analysis models
biplot.symcoca | Biplots of co-correspondence analysis models
bryophyte | Bryophytes and vascular plants in Carpathian spring meadows
coca | Fit Co-Correspondence Analysis Ordination Models
coca.default | Fit Co-Correspondence Analysis Ordination Models
coca.formula | Fit Co-Correspondence Analysis Ordination Models
cocorresp | Co-correspondence analysis ordination methods for community ecology
coinertia | Co-inertia analysis
coinertia.default | Co-inertia analysis
coinertiaI | Coinertia analysis with identity matrices
corAxis | Correlation between ordination axes
corAxis.default | Correlation between ordination axes
corAxis.symcoca | Correlation between ordination axes
crossval | Cross-validation for predictive Co-Correspondence Analysis models
envfit.coca | Fit an environmental vector or factor to a Co-CA ordination
fitCoinertia | Co-inertia analysis
fitted.symcoca | Fitted values of a Symmetric Co-Correpsondence analysis model.
loadings | CoCA species loadings
loadings.predcoca | CoCA species loadings
loadings.symcoca | CoCA species loadings
lodaings.default | CoCA species loadings
mcChi | Standardised chi-square residuals
permutest.coca | Permutation test for predictive co-correspondence analysis models
plants | Carabid beetles and vascular plants in Dutch roadside verges
plot.predcoca | Biplots for predictive co-correspondence analysis
plot.symcoca | Plots for symmetric co-correspondence analysis
points.coca | Add points to a Co-CA plot
print.crossval | Cross-validation for predictive Co-Correspondence Analysis models
print.fitCoinertia | Co-inertia analysis
print.fitted.symcoca | Fitted values of a Symmetric Co-Correpsondence analysis model.
print.permutest.coca | Permutation test for predictive co-correspondence analysis models
print.predcoca | Fit Co-Correspondence Analysis Ordination Models
print.summary.crossval | Cross-validation for predictive Co-Correspondence Analysis models
print.summary.fitCoinertia | Co-inertia analysis
print.summary.permutest.coca | Permutation test for predictive co-correspondence analysis models
print.summary.predcoca | Summarizing Co-CA Model Fits
print.summary.symcoca | Summarizing Co-CA Model Fits
print.symcoca | Fit Co-Correspondence Analysis Ordination Models
rescale | Rescales CoCA species scores
rescale.default | Rescales CoCA species scores
rescale.symcoca | Rescales CoCA species scores
resid.symcoca | Extract Model Residuals
scaleChi | Standardised chi-square residuals
scores.predcoca | Get Species or Site Scores from an Ordination
scores.symcoca | Get Species or Site Scores from an Ordination
screeplot.symcoca | Screeplot for symmetric co-correspondence analysis
simpls | Modified version of Sijmen de Jong's SIMPLS
summary.crossval | Cross-validation for predictive Co-Correspondence Analysis models
summary.fitCoinertia | Co-inertia analysis
summary.permutest.coca | Permutation test for predictive co-correspondence analysis models
summary.predcoca | Summarizing Co-CA Model Fits
summary.symcoca | Summarizing Co-CA Model Fits
vascular | Bryophytes and vascular plants in Carpathian spring meadows
verges | Carabid beetles and vascular plants in Dutch roadside verges
weights.predcoca | Exctract CoCA model weights
weights.symcoca | Exctract CoCA model weights