Package: cauphy
Version: 1.0.2
Title: Trait Evolution on Phylogenies Using the Cauchy Process
Description: The Cauchy Process can model pulsed continuous trait evolution
    on phylogenies. The likelihood is tractable, and is used for parameter
    inference and ancestral trait reconstruction.
    See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.
Authors@R: c(
    person("Gilles", "Didier", email = "gilles.didier@free.fr", role = c("aut", "cph")),
    person("Paul", "Bastide", email = "paul.bastide@cnrs.fr", role = c("aut", "cre")))
Depends: R (>= 3.5), ape (>= 5.5)
Imports: methods, robustbase, phylolm, nloptr, pracma, foreach,
        doParallel, HDInterval
Suggests: covr, knitr, rmarkdown, spelling, geiger, testthat (>= 3.0.0)
License: GPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.2.3
Config/testthat/edition: 3
LazyData: true
VignetteBuilder: knitr
URL: https://gilles-didier.github.io/cauphy/
BugReports: https://github.com/gilles-didier/cauphy/issues
Language: en-US
NeedsCompilation: yes
Packaged: 2023-11-29 12:49:10 UTC; bastidep
Author: Gilles Didier [aut, cph],
  Paul Bastide [aut, cre]
Maintainer: Paul Bastide <paul.bastide@cnrs.fr>
Repository: CRAN
Date/Publication: 2023-11-29 13:10:02 UTC
Built: R 4.2.3; aarch64-apple-darwin20; 2023-11-29 15:41:38 UTC; unix
Archs: cauphy.so.dSYM
