Package: cancerGI
Type: Package
Title: Analyses of Cancer Gene Interaction
Version: 1.0.1
Date: 2023-08-30
Author: Audrey Qiuyan Fu and Xiaoyue Wang
Maintainer: Audrey Q. Fu <audreyqyfu@gmail.com>
Description: Functions to perform the following analyses: i) inferring epistasis from RNAi double knockdown data; ii) identifying gene pairs of multiple mutation patterns; iii) assessing association between gene pairs and survival; and iv) calculating the smallworldness of a graph (e.g., a gene interaction network).  Data and analyses are described in Wang, X., Fu, A. Q., McNerney, M. and White, K. P. (2014). Widespread genetic epistasis among breast cancer genes. Nature Communications. 5 4828. <doi:10.1038/ncomms5828>.
Depends: R (>= 2.10)
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Imports: systemfit, qvalue, survival, reshape2, igraph
NeedsCompilation: no
Packaged: 2023-09-01 04:41:38 UTC; audreyq.fu
Repository: CRAN
Date/Publication: 2023-09-07 06:52:33 UTC
Built: R 4.2.0; ; 2023-09-13 04:01:41 UTC; unix
