R: Categorical Analysis of Neo- And Paleo-Endemism

# Categorical Analysis of Neo- And Paleo-Endemism

## Documentation for package ‘canaper’ version 1.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

acacia | _Acacia_ example data
biod_example | Biodiverse example data
biod_results | Output from Biodiverse
cpr_classify_endem | Classify phylogenetic endemism
cpr_classify_signif | Classify statistical significance
cpr_endem_cols | CVD-friendly color palette for plotting results of CANAPE
cpr_endem_cols_2 | CVD-friendly color palette for plotting results of CANAPE, version 2
cpr_endem_cols_3 | CVD-friendly color palette for plotting results of CANAPE, version 3
cpr_endem_cols_4 | CVD-friendly color palette for plotting results of CANAPE, version 4
cpr_iter_sim | Simulate the number of iterations needed to generate a random community that is sufficiently different from the original community
cpr_make_pal | Make a palette of colors for plotting CANAPE results
cpr_rand_comm | Randomize a single community matrix
cpr_rand_test | Run a randomization analysis for one or more biodiversity metrics
cpr_signif_cols | CVD-friendly color palette for plotting results of randomization test
cpr_signif_cols_2 | CVD-friendly color palette for plotting results of randomization test, version 2
mishler_endem_cols | Original color palette for plotting results of CANAPE
mishler_signif_cols | Original color palette for plotting results of CANAPE
phylocom | Phylocom example data