.nonzero                Helper function to compute the elements in g0
                        that have no zero values.The function is taken
                        from the Ringo package
adj_mat                 adj_mat: Function to compute the adjacency
                        matrix of an area.
bam-class               Class 'bam' digram
bam_clusters            bam_clusters: Function to estimate the
                        connectivity of suitable areas
bam_sim                 bam_sim: Simulate dispersal dynamics using the
                        set B of the BAM framework.
bam_ssim                bam_ssim: Simulate dispersal dynamics using the
                        set B of the BAM framework.
bioindex-class          Class 'bioindex'
bioindex_sparse-class   Class 'bioindex_sparse'
community_sim           community_bam: Community 'bamm'
community_sim-class     Class 'community_sim' digram
csd-class               Class 'csd'
csd_estimate            csd_estimate: Estimate the connectivity
                        suitability and dispersal plot
csim2pam                csim2pam: Converts community simulation to a
                        Presence Absence Matrix (PAM)
diversity_range-class   Class 'diversity_range'
diversity_range_analysis
                        range_diversity_analysis: diversity analysis
eigen_bam               eigen_bam: Compute the Eigen system of two bam
                        objects
g_area-class            S4 classes to organize data and results of
                        'bamm' objects
jaccard                 jaccard: Estimates the Jaccard index for
                        comparing two binary maps
leaflet-class           Class 'leaflet' leaflet
model2sparse            model2sparse: Converts a niche model into a
                        diagonal sparse matrix
models2pam              models2pam: Converts binary rasters to a PAM
null_dispersion_field_distribution
                        null_dispersion_field_distribution: Null
                        distribution of the dispersion field
occs2sparse             occs2sparse: Converts occurrence data into a
                        sparse matrix object
pam-class               Class 'pam' Presence-Absence Matrix
pam2bioindex            pam2bioindex: PAM to biodiversity index
pam2richness            pam2richness: Converts Presence Absence Matrix
                        (pam object) to richness raster
permute_pam             permute_pam: Function to permute a
                        Presence-Absence-Matrix.
plot,diversity_range,ANY-method
                        Plot method for objects of class
                        diversity_range 'bamm'.
predict,bam-method      Predict method of the package 'bamm'.
sdm_sim                 sdm_sim: Simulate single species dispersal
                        dynamics using the BAM framework.
setA-class              Class for the A set of the BAM diagram
setM-class              Class for the M set of the 'bamm' diagram
shape2Grid              shape2Grid: Function to create a grid given a
                        spatial polygon
show,setA-method        Show information in setA class 'bamm'.
sim2Animation           sim2Animation: Animate BAM simulation object.
sim2Raster              sim2Raster: Convert a BAM simulation object to
                        RasterStack
