AbstractCNData          The AbstractCNData class
AbstractPSCNData        The AbstractPSCNData class
AromaCellCpgFile        A binary file holding local CpG density for
                        each cell (probe/feature)
AromaCellPositionFile   A binary file holding chromosome/position for
                        each cell
AromaCellTabularBinaryFile
                        The AromaCellTabularBinaryFile class
AromaGenomeTextFile     The AromaGenomeTextFile class
AromaMicroarrayDataFile
                        The abstract AromaMicroarrayDataFile class
AromaMicroarrayDataSet
                        The AromaMicroarrayDataSet class
AromaMicroarrayDataSetTuple
                        The AromaMicroarrayDataSetTuple class
AromaMicroarrayTabularBinaryFile
                        The AromaMicroarrayTabularBinaryFile class
AromaPlatform           The AromaPlatform class
AromaPlatformInterface
                        The AromaPlatformInterface class
AromaRepository         The AromaRepository class
AromaTabularBinaryFile
                        The AromaTabularBinaryFile class
AromaTabularBinarySet   The AromaTabularBinarySet class
AromaTransform          The AromaTransform class
AromaUnitCallFile       The AromaUnitCallFile class
AromaUnitCallSet        The AromaUnitCallSet class
AromaUnitFracBCnBinaryFile
                        The AromaUnitFracBCnBinaryFile class
AromaUnitFracBCnBinarySet
                        The AromaUnitFracBCnBinarySet class
AromaUnitGenotypeCallFile
                        The AromaUnitGenotypeCallFile class
AromaUnitGenotypeCallSet
                        The AromaUnitGenotypeCallSet class
AromaUnitPscnBinaryFile
                        The AromaUnitPscnBinaryFile class
AromaUnitPscnBinarySet
                        The AromaUnitPscnBinarySet class
AromaUnitSignalBinaryFile
                        The AromaUnitSignalBinaryFile class
AromaUnitSignalBinarySet
                        The AromaUnitSignalBinarySet class
AromaUnitTabularBinaryFile
                        The AromaUnitTabularBinaryFile class
AromaUnitTotalCnBinaryFile
                        The AromaUnitTotalCnBinaryFile class
AromaUnitTotalCnBinarySet
                        The AromaUnitTotalCnBinarySet class
AromaUnitTypesFile      The AromaUnitTypesFile class
BinnedScatter           The BinnedScatter class
CbsModel                The CbsModel class
ChromosomalModel        The ChromosomalModel class
ChromosomeExplorer      The ChromosomeExplorer class
CopyNumberChromosomalModel
                        The CopyNumberChromosomalModel class
CopyNumberSegmentationModel
                        The CopyNumberSegmentationModel class
Explorer                The Explorer class
GladModel               The GladModel class
HaarSegModel            The HaarSegModel class
NonPairedPSCNData       The NonPairedPSCNData class
PairedPSCNData          The PairedPSCNData class
ParametersInterface     The ParametersInterface class interface
RawAlleleBFractions     The RawAlleleBFractions class
RawCopyNumberModel      The RawCopyNumberModel class
RawCopyNumbers          The RawCopyNumbers class
RawGenomicSignals       The RawGenomicSignals class
RawMirroredAlleleBFractions
                        The RawMirroredAlleleBFractions class
RawSequenceReads        The RawSequenceReads class
SegmentedAlleleBFractions
                        The SegmentedAlleleBFractions class
SegmentedCopyNumbers    The SegmentedCopyNumbers class
SegmentedGenomicSignalsInterface
                        The SegmentedGenomicSignalsInterface class
                        interface
UnitAnnotationDataFile
                        The UnitAnnotationDataFile interface class
UnitNamesFile           The UnitNamesFile interface class
UnitTypesFile           The UnitTypesFile interface class
aroma.core-package      Package aroma.core
colBinnedSmoothing.matrix
                        Binned smoothing of a matrix column by column
colKernelSmoothing.matrix
                        Kernel smoothing of a matrix column by column
doCBS                   Performs Circular Binary Segmentation (CBS) on
                        a data set
