R: PARAFAC Analysis of Fluorescence Excitation-Emission Matrices

# PARAFAC Analysis of Fluorescence Excitation-Emission Matrices

## Documentation for package ‘albatross’ version 0.3-8

- DESCRIPTION file.
- Package NEWS.

## Help Pages

albatross-package | PARAFAC Analysis of Fluorescence Excitation-Emission Matrices
absindex | Functions of absorbance data
absorp | Synthetic fluorescence excitation-emission matrices and absorbance spectra
albatross | PARAFAC Analysis of Fluorescence Excitation-Emission Matrices
as.data.frame.feem | Transform a FEEM object into a data.frame
as.data.frame.feemcube | Transform a FEEM object into a data.frame
as.list.feemcube | Data cubes of fluorescence excitation-emission matrices
coef.feemflame | Fluorescence and scAttering Model Estimation
coef.feemjackknife | Jack-knife outlier detection in PARAFAC models
coef.feemparafac | Compute PARAFAC on a FEEM cube object and access the results
coef.feemsplithalf | Split-half analysis of PARAFAC models
cube | Synthetic fluorescence excitation-emission matrices and absorbance spectra
diverging.colours | Perceptually uniform palettes
feem | Create a fluorescence excitation-emission matrix object
feem.character | Create a fluorescence excitation-emission matrix object
feem.connection | Create a fluorescence excitation-emission matrix object
feem.data.frame | Create a fluorescence excitation-emission matrix object
feem.matrix | Create a fluorescence excitation-emission matrix object
feemcorcondia | Core consistency diagnostic for PARAFAC models
feemcube | Data cubes of fluorescence excitation-emission matrices
feemcube.array | Data cubes of fluorescence excitation-emission matrices
feemcube.feemflame | Data cubes of fluorescence excitation-emission matrices
feemcube.feemjackknife | Data cubes of fluorescence excitation-emission matrices
feemcube.feemparafac | Data cubes of fluorescence excitation-emission matrices
feemcube.feemsplithalf | Data cubes of fluorescence excitation-emission matrices
feemcube.list | Data cubes of fluorescence excitation-emission matrices
feemflame | Fluorescence and scAttering Model Estimation
feemgrid | Interpolate FEEMs on a given wavelength grid
feemgrid.feem | Interpolate FEEMs on a given wavelength grid
feemgrid.feemcube | Interpolate FEEMs on a given wavelength grid
feemgrid.list | Interpolate FEEMs on a given wavelength grid
feemife | Absorbance-based inner filter effect correction
feemife.feem | Absorbance-based inner filter effect correction
feemife.feemcube | Absorbance-based inner filter effect correction
feemife.list | Absorbance-based inner filter effect correction
feemindex | Fluorescence indices and peak values
feemindex.feem | Fluorescence indices and peak values
feemindex.feemcube | Fluorescence indices and peak values
feemindex.list | Fluorescence indices and peak values
feemjackknife | Jack-knife outlier detection in PARAFAC models
feemlist | Create lists of FEEM objects
feemlist.character | Create lists of FEEM objects
feemlist.EEM | Create lists of FEEM objects
feemlist.eemlist | Create lists of FEEM objects
feemparafac | Compute PARAFAC on a FEEM cube object and access the results
feems | Synthetic fluorescence excitation-emission matrices and absorbance spectra
feemscale | Rescale FEEM spectra to a given norm and remember the scale factor
feemscale.feem | Rescale FEEM spectra to a given norm and remember the scale factor
feemscale.feemcube | Rescale FEEM spectra to a given norm and remember the scale factor
feemscale.list | Rescale FEEM spectra to a given norm and remember the scale factor
feemscatter | Handle scattering signal in FEEMs
feemscatter.feem | Handle scattering signal in FEEMs
feemscatter.feemcube | Handle scattering signal in FEEMs
feemscatter.list | Handle scattering signal in FEEMs
feemsplithalf | Split-half analysis of PARAFAC models
fitted.feemflame | Fluorescence and scAttering Model Estimation
fitted.feemparafac | Compute PARAFAC on a FEEM cube object and access the results
marine.colours | Perceptually uniform palettes
plot.feem | Plot a FEEM object
plot.feem.resid | Plot a FEEM object
plot.feemcube | Plot a FEEM object
plot.feemflame | Fluorescence and scAttering Model Estimation
plot.feemjackknife | Jack-knife outlier detection in PARAFAC models
plot.feemparafac | Compute PARAFAC on a FEEM cube object and access the results
plot.feemsplithalf | Split-half analysis of PARAFAC models
print.feemcorcondia | Core consistency diagnostic for PARAFAC models
print.feemparafac | Compute PARAFAC on a FEEM cube object and access the results
print.feemsplithalf | Split-half analysis of PARAFAC models
reorder.feemparafac | Compute PARAFAC on a FEEM cube object and access the results
rescale | Compute PARAFAC on a FEEM cube object and access the results
rescale.feemparafac | Compute PARAFAC on a FEEM cube object and access the results
residuals.feemflame | Fluorescence and scAttering Model Estimation
residuals.feemparafac | Compute PARAFAC on a FEEM cube object and access the results
t.feem | Create a fluorescence excitation-emission matrix object
write.openfluor | Export a PARAFAC model for the OpenFluor database
[.feem | Extract or replace parts of FEEM objects
[.feemcube | Extract or replace parts of FEEM cubes
[<-.feem | Extract or replace parts of FEEM objects
[<-.feemcube | Extract or replace parts of FEEM cubes