agvgd                   Align-GVGD (A-GVGD)
alignment_file          Pre-bundled alignments
amino_acids             The 20 standard amino acids
cpv_ranges              Determine CPV ranges
dev                     Deviation function
gd                      Grantham deviation
gv                      Grantham variation
poi_to_res              Convert an alignment position to residue
                        position
profile_to_alignment    Converts a sequence profile to an alignment
read_alignment          Read a protein sequence multiple alignment
read_substitutions      Read a file with amino acid substitutions
res_to_poi              Convert a residue position to an alignment
                        position
write_alignment         Export an alignment to FASTA
write_substitutions     Generate and export a list of substitutions
