BCI.env                 Barro Colorado Island Quadrat Descriptions
BiodiversityR-package   GUI for biodiversity, suitability and community
                        ecology analysis
BiodiversityR.changeLog
                        changeLog file for BiodiversityR
BiodiversityRGUI        GUI for Biodiversity, Community Ecology and
                        Ensemble Suitability Analysis
CAPdiscrim              Canonical Analysis of Principal Coordinates
                        based on Discriminant Analysis
CucurbitaClim           Baseline and Future WorldClim 2.1 Climatic Data
                        for Cucurbita Species
NMSrandom               Calculate the NMS Result with the Smallest
                        Stress from Various Random Starts
PCAsignificance         PCA Significance
accumresult             Alternative Species Accumulation Curve Results
add.spec.scores         Add Species Scores to Unconstrained Ordination
                        Results
balanced.specaccum      Balanced Species Accumulation Curves
caprescale              Rescaling of Capscale Results to Reflect Total
                        Sums of Squares Of Distance Matrix
crosstabanalysis        Presence-absence Analysis by Cross Tabulation
deviancepercentage      Calculate Percentage and Significance of
                        Deviance Explained by a GLM
dist.eval               Distance Matrix Evaluation
dist.zeroes             Distance Matrix Transformation
distdisplayed           Compare Distance Displayed in Ordination
                        Diagram with Distances of Distance Matrix
disttransform           Community Matrix Transformation
diversityresult         Alternative Diversity Results
ensemble.PET.season     Calculate the balance between precipitation and
                        potential evapotranspiration for the dry season
                        with the largest balance (maximum
                        climatological water deficit, accumulated
                        aridity).
ensemble.PET.seasons    Raster calculations of beginnings and lengths
                        of growing seasons from the difference between
                        precipitation (P) and potential
                        evapotranspiration (PET), defining dry months
                        with 2 * P < PET.
ensemble.analogue       Climate analogues from climatic distance raster
                        layers.
ensemble.batch          Suitability mapping based on ensembles of
                        modelling algorithms: batch processing
ensemble.bioclim        Suitability mapping based on the BIOCLIM
                        algorithm
ensemble.bioclim.graph
                        Graphs of bioclimatic ranges of species and
                        climates
ensemble.calibrate.models
                        Suitability mapping based on ensembles of
                        modelling algorithms: calibration of models and
                        weights
ensemble.concave.hull   Analysis of Niche Overlap in Environmental
                        Space for Changed Climates via Concave Hulls
ensemble.dummy.variables
                        Suitability mapping based on ensembles of
                        modelling algorithms: handling of categorical
                        data
ensemble.ecocrop        Suitability mapping via absolute and optimal
                        precipitation and temperature limits as in the
                        ECOCROP model.
ensemble.envirem.masterstack
                        Calculate bioclimatic variables via the
                        'envirem' package for data.frames.
ensemble.evaluate       Model evaluation including True Skill Statistic
                        (TSS), AUCdiff and Symmetric Extremal
                        Dependence Index (SEDI).
ensemble.novel          Mapping of novel environmental conditions
                        (areas where some of the environmental
                        conditions are outside the range of
                        environmental conditions of a reference area).
ensemble.raster         Suitability mapping based on ensembles of
                        modelling algorithms: consensus mapping
ensemble.red            Area of Occupancy (AOO) and Extent of
                        Occurrence (EOO) via the 'red' library.
ensemble.spatialBlock   Spatially or environmentally separated folds
                        for cross-validation via blockCV::spatialBlock
                        or blockCV::envBlock
ensemble.spatialThin    Thinning of presence point coordinates in
                        geographical or environmental space
ensemble.terra          Suitability mapping based on ensembles of
                        modelling algorithms: consensus mapping via the
                        terra package
ensemble.zones          Mapping of environmental zones based on the
                        Mahalanobis distance from centroids in
                        environmental space.
evaluation.strip.data   Evaluation strips for ensemble suitability
                        mapping
faramea                 Faramea occidentalis abundance in Panama
ifri                    Example data from the International Forestry
                        Resources and Institutions (IFRI) research
                        network
importancevalue         Importance Value
loaded.citations        Give Citation Information for all Loaded
                        Packages
makecommunitydataset    Make a Community Dataset from a Stacked Dataset
multiconstrained        Pairwise Comparisons for All Levels of a
                        Categorical Variable by RDA, CCA or Capscale
nested.anova.dbrda      Nested Analysis of Variance via Distance-based
                        Redundancy Analysis or Non-parametric
                        Multivariate Analysis of Variance
nnetrandom              Calculate the NNET Result with the Smallest
                        Value from Various Random Starts
ordicoeno               Coenoclines for an Ordination Axis
ordisymbol              Add Other Graphical Items to Ordination
                        Diagrams
radfitresult            Alternative Rank Abundance Fitting Results
rankabundance           Rank Abundance Curves
removeNAcomm            Synchronize Community and Environmental
                        Datasets
renyiresult             Alternative Renyi Diversity Results
sites.long              Helper Functions to Prepare Plotting of
                        Accumulation, Diversity Profile and Ordiplot
                        Results via ggplot2
spatialsample           Spatial Sampling within a Polygon
transfgradient          Gradient for Hypothetical Example of Turover of
                        Species Composition
transfspecies           Hypothetical Example of Turover of Species
                        Composition
treegoer.score          Calculate climate scores with the Tree Globally
                        Observed Environmental Ranges (TreeGOER)
                        database.
warcom                  Warburgia ugandensis AFLP Scores
warenv                  Warburgia ugandensis Population Structure
