Bernadette-package      Bayesian inference and model selection for
                        stochastic epidemics
age_distribution        Country-specific age distribution
age_specific_cusum_infection_counts
                        Age distribution of cumulative reported
                        infections for Greece
age_specific_infection_counts
                        Age distribution of new reported infections for
                        Greece
age_specific_mortality_counts
                        Age distribution of new reported deaths for
                        Greece
aggregate_age_distribution
                        Aggregate the age distribution matrix
aggregate_contact_matrix
                        Aggregate a contact matrix
aggregate_ifr_react     Aggregate the Infection Fatality Ratio
contact_matrices        Contact matrices per country
contact_matrix          Country-specific contact matrix
countries_un            Names of countries with an available age
                        distribution
country_contact_matrices
                        Names of countries for which a contact matrix
                        is available
itd_distribution        Distribution of the time between infection and
                        death
plot_age_distribution   Bar plot of the age distribution
plot_contact_matrix     Contact matrix heatmap
plot_posterior_cm       Plot the posterior contact matrix
plot_posterior_infections
                        Plot the posterior distribution of the
                        infection counts
plot_posterior_mortality
                        Plot the posterior distribution of the
                        mortality counts
plot_posterior_rt       Plot the estimated effective reproduction
                        number trajectory
plot_posterior_transmrate
                        Plot the estimated age-specific transmission
                        rate
posterior_infections    Summarize the posterior distribution of the
                        infection counts
posterior_mortality     Summarize the posterior distribution of the
                        mortality counts
posterior_rt            Estimate the effective reproduction number with
                        the next generation matrix approach
posterior_transmrate    Estimate the age-specific transmission rate
priors                  Prior distributions and options
stan_igbm               Bayesian diffusion-driven multi-type epidemic
                        models via Stan
summary.stanigbm        Summary of stanigbm posterior output
