ActivePathways          ActivePathways
DPM                     Merge p-values using the DPM method.
GMT                     Read and Write GMT files
brownsMethod            Merge p-values using the Brown's method.
columnSignificance      Determine which terms are found to be
                        significant using each column individually.
export_as_CSV           Export the results from ActivePathways as a
                        comma-separated values (CSV) file.
hypergeometric          Hypergeometric test
makeBackground          Make a background list of genes (i.e., the
                        statistical universe) based on all the terms
                        (gene sets, pathways) considered.
merge_p_values          Merge a list or matrix of p-values
orderedHypergeometric   Ordered Hypergeometric Test
prepareCytoscape        Prepare files for building an enrichment map
                        network visualization in Cytoscape
